(13 nodes) PUA-like superfamily network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIM1	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (1073 aa)
	D5G6J4_TUBMM	Uncharacterized protein. (511 aa)
	D5G6Z7_TUBMM	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	D5G7F0_TUBMM	Translation machinery-associated protein 20; Involved in translation; Belongs to the TMA20 family. (183 aa)
	MET3	Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family. (566 aa)
	D5G9F2_TUBMM	YDG domain-containing protein. (466 aa)
	D5GBG1_TUBMM	PUA domain-containing protein. (420 aa)
	D5GCV0_TUBMM	EVE domain-containing protein. (259 aa)
	D5GGH1_TUBMM	Uncharacterized protein. (642 aa)
	D5GJB8_TUBMM	YDG domain-containing protein. (420 aa)
	D5GKS1_TUBMM	PUA domain-containing protein. (464 aa)
	D5GL71_TUBMM	Lon protease homolog; Belongs to the peptidase S16 family. (888 aa)
	D5GMX2_TUBMM	YDG domain-containing protein. (603 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G6Z7_TUBMM	D5GKS1_TUBMM	D5G6Z7	D5GKS1	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	PUA domain-containing protein.	0.786
D5G7F0_TUBMM	D5GGH1_TUBMM	D5G7F0	D5GGH1	Translation machinery-associated protein 20; Involved in translation; Belongs to the TMA20 family.	Uncharacterized protein.	0.550
D5GGH1_TUBMM	D5G7F0_TUBMM	D5GGH1	D5G7F0	Uncharacterized protein.	Translation machinery-associated protein 20; Involved in translation; Belongs to the TMA20 family.	0.550
D5GKS1_TUBMM	D5G6Z7_TUBMM	D5GKS1	D5G6Z7	PUA domain-containing protein.	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.786