62 items (Tuber melanosporum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GM63_TUBMM	S1 motif domain-containing protein. (180 aa)
	D5G5A6_TUBMM	Uncharacterized protein. (1170 aa)
	D5G5J8_TUBMM	CPSF_A domain-containing protein. (1053 aa)
	D5G674_TUBMM	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (620 aa)
	D5G675_TUBMM	Uncharacterized protein. (436 aa)
	D5G6F0_TUBMM	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1386 aa)
	D5G756_TUBMM	AAA domain-containing protein. (351 aa)
	D5G763_TUBMM	RPOLD domain-containing protein. (340 aa)
	D5G7A7_TUBMM	RING-type domain-containing protein. (112 aa)
	D5G7Q2_TUBMM	Uncharacterized protein. (174 aa)
	D5G7T0_TUBMM	Uncharacterized protein. (826 aa)
	D5G8A5_TUBMM	Uncharacterized protein. (413 aa)
	D5G8A7_TUBMM	RNA_pol_L_2 domain-containing protein. (119 aa)
	D5G958_TUBMM	RPA_C domain-containing protein. (348 aa)
	D5G9K1_TUBMM	Uncharacterized protein. (156 aa)
	D5G9K3_TUBMM	Uncharacterized protein; Belongs to the peptidase C19 family. (1135 aa)
	D5GB50_TUBMM	Uncharacterized protein. (205 aa)
	D5GB76_TUBMM	Uncharacterized protein. (847 aa)
	D5GBQ9_TUBMM	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (614 aa)
	D5GD37_TUBMM	USP domain-containing protein. (1091 aa)
	D5GD44_TUBMM	BZIP domain-containing protein. (237 aa)
	D5GDG5_TUBMM	Uncharacterized protein. (523 aa)
	D5GDV8_TUBMM	BRCT domain-containing protein. (755 aa)
	D5GFK2_TUBMM	Zds_C domain-containing protein. (560 aa)
	D5GFK8_TUBMM	Uncharacterized protein. (264 aa)
	D5GFK9_TUBMM	TFIIS central domain-containing protein. (612 aa)
	D5GFS9_TUBMM	Uncharacterized protein. (232 aa)
	D5GGQ0_TUBMM	Ubiquitin-like domain-containing protein. (153 aa)
	D5GGS5_TUBMM	AAA domain-containing protein. (358 aa)
	D5GH69_TUBMM	Uncharacterized protein. (306 aa)
	D5GHM8_TUBMM	CULLIN_2 domain-containing protein; Belongs to the cullin family. (873 aa)
	D5GIN2_TUBMM	RING-type domain-containing protein. (373 aa)
	D5GIS1_TUBMM	RRM domain-containing protein. (152 aa)
	D5GIS2_TUBMM	Uncharacterized protein. (83 aa)
	D5GIV2_TUBMM	AAA domain-containing protein. (372 aa)
	D5GJ94_TUBMM	Uncharacterized protein. (357 aa)
	D5GJ97_TUBMM	Uncharacterized protein. (105 aa)
	D5GJ99_TUBMM	Uncharacterized protein. (110 aa)
	D5GJJ3_TUBMM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	D5GJM1_TUBMM	AAA domain-containing protein. (387 aa)
	D5GJW7_TUBMM	BZIP domain-containing protein. (303 aa)
	D5GJX0_TUBMM	Uncharacterized protein. (361 aa)
	D5GK82_TUBMM	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (469 aa)
	D5GK95_TUBMM	Uncharacterized protein. (232 aa)
	D5GKH8_TUBMM	Uncharacterized protein. (422 aa)
	D5GKM4_TUBMM	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (460 aa)
	D5GKT6_TUBMM	Uncharacterized protein. (1025 aa)
	D5GKW2_TUBMM	Replication factor C subunit 1. (1025 aa)
	D5GLD4_TUBMM	Uncharacterized protein. (534 aa)
	D5GLF3_TUBMM	AAA domain-containing protein. (953 aa)
	D5GM43_TUBMM	Uncharacterized protein. (616 aa)
	D5GMC8_TUBMM	Uncharacterized protein. (73 aa)
	D5GME3_TUBMM	Helicase ATP-binding domain-containing protein. (748 aa)
	D5GMI1_TUBMM	CBFD_NFYB_HMF domain-containing protein. (170 aa)
	D5GNB6_TUBMM	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (378 aa)
	D5GNC8_TUBMM	Uncharacterized protein. (595 aa)
	D5GNK2_TUBMM	Uncharacterized protein. (76 aa)
	D5GNK6_TUBMM	Uncharacterized protein. (220 aa)
	D5GNN0_TUBMM	RPOL4c domain-containing protein. (146 aa)
	D5GNN4_TUBMM	Uncharacterized protein. (524 aa)
	D5GPB0_TUBMM	Uncharacterized protein. (413 aa)
	D5GPS1_TUBMM	TPR_REGION domain-containing protein. (164 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G5J8_TUBMM	D5G674_TUBMM	D5G5J8	D5G674	CPSF_A domain-containing protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.811
D5G5J8_TUBMM	D5G675_TUBMM	D5G5J8	D5G675	CPSF_A domain-containing protein.	Uncharacterized protein.	0.811
D5G5J8_TUBMM	D5G756_TUBMM	D5G5J8	D5G756	CPSF_A domain-containing protein.	AAA domain-containing protein.	0.721
D5G5J8_TUBMM	D5G763_TUBMM	D5G5J8	D5G763	CPSF_A domain-containing protein.	RPOLD domain-containing protein.	0.880
D5G5J8_TUBMM	D5G7A7_TUBMM	D5G5J8	D5G7A7	CPSF_A domain-containing protein.	RING-type domain-containing protein.	0.995
D5G5J8_TUBMM	D5G7Q2_TUBMM	D5G5J8	D5G7Q2	CPSF_A domain-containing protein.	Uncharacterized protein.	0.887
D5G5J8_TUBMM	D5G7T0_TUBMM	D5G5J8	D5G7T0	CPSF_A domain-containing protein.	Uncharacterized protein.	0.830
D5G5J8_TUBMM	D5G8A7_TUBMM	D5G5J8	D5G8A7	CPSF_A domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.886
D5G5J8_TUBMM	D5G958_TUBMM	D5G5J8	D5G958	CPSF_A domain-containing protein.	RPA_C domain-containing protein.	0.695
D5G5J8_TUBMM	D5G9K1_TUBMM	D5G5J8	D5G9K1	CPSF_A domain-containing protein.	Uncharacterized protein.	0.873
D5G5J8_TUBMM	D5G9K3_TUBMM	D5G5J8	D5G9K3	CPSF_A domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.443
D5G5J8_TUBMM	D5GB50_TUBMM	D5G5J8	D5GB50	CPSF_A domain-containing protein.	Uncharacterized protein.	0.650
D5G5J8_TUBMM	D5GBQ9_TUBMM	D5G5J8	D5GBQ9	CPSF_A domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.621
D5G5J8_TUBMM	D5GD44_TUBMM	D5G5J8	D5GD44	CPSF_A domain-containing protein.	BZIP domain-containing protein.	0.521
D5G5J8_TUBMM	D5GFS9_TUBMM	D5G5J8	D5GFS9	CPSF_A domain-containing protein.	Uncharacterized protein.	0.783
D5G5J8_TUBMM	D5GGQ0_TUBMM	D5G5J8	D5GGQ0	CPSF_A domain-containing protein.	Ubiquitin-like domain-containing protein.	0.521
D5G5J8_TUBMM	D5GGS5_TUBMM	D5G5J8	D5GGS5	CPSF_A domain-containing protein.	AAA domain-containing protein.	0.709
D5G5J8_TUBMM	D5GH69_TUBMM	D5G5J8	D5GH69	CPSF_A domain-containing protein.	Uncharacterized protein.	0.650
D5G5J8_TUBMM	D5GHM8_TUBMM	D5G5J8	D5GHM8	CPSF_A domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
D5G5J8_TUBMM	D5GIN2_TUBMM	D5G5J8	D5GIN2	CPSF_A domain-containing protein.	RING-type domain-containing protein.	0.704