72 items (Tuber melanosporum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GQ27_TUBMM	Uncharacterized protein. (413 aa)
	D5GP56_TUBMM	TAFII28 domain-containing protein. (258 aa)
	D5GNV3_TUBMM	Uncharacterized protein. (602 aa)
	D5GNQ4_TUBMM	Uncharacterized protein. (312 aa)
	D5GNP8_TUBMM	Uncharacterized protein. (277 aa)
	D5GNP0_TUBMM	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (285 aa)
	D5GNN6_TUBMM	C2H2-type domain-containing protein. (823 aa)
	D5GNN4_TUBMM	Uncharacterized protein. (524 aa)
	D5GNN0_TUBMM	RPOL4c domain-containing protein. (146 aa)
	D5GNK6_TUBMM	Uncharacterized protein. (220 aa)
	D5GNK2_TUBMM	Uncharacterized protein. (76 aa)
	D5GNE3_TUBMM	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (762 aa)
	D5GNB6_TUBMM	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (378 aa)
	D5GEB5_TUBMM	Cyclin N-terminal domain-containing protein. (238 aa)
	D5GLV0_TUBMM	Uncharacterized protein. (241 aa)
	D5GLR4_TUBMM	Uncharacterized protein. (312 aa)
	D5GLG2_TUBMM	Uncharacterized protein. (157 aa)
	D5GLG0_TUBMM	Uncharacterized protein. (862 aa)
	D5GL64_TUBMM	Uncharacterized protein. (390 aa)
	D5GMM4_TUBMM	Uncharacterized protein. (1138 aa)
	D5GMH4_TUBMM	Uncharacterized protein. (317 aa)
	D5GMC8_TUBMM	Uncharacterized protein. (73 aa)
	D5GM63_TUBMM	S1 motif domain-containing protein. (180 aa)
	D5GM47_TUBMM	Uncharacterized protein. (370 aa)
	D5GL42_TUBMM	Uncharacterized protein. (320 aa)
	D5GKT6_TUBMM	Uncharacterized protein. (1025 aa)
	D5GJJ3_TUBMM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	D5G9D5_TUBMM	Uncharacterized protein. (684 aa)
	D5G993_TUBMM	Uncharacterized protein. (700 aa)
	D5G963_TUBMM	Uncharacterized protein. (253 aa)
	D5G915_TUBMM	Uncharacterized protein. (120 aa)
	D5GEA1_TUBMM	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (114 aa)
	D5GE74_TUBMM	Uncharacterized protein; Belongs to the cyclin family. (405 aa)
	D5GDH6_TUBMM	Uncharacterized protein. (337 aa)
	D5GDB5_TUBMM	Uncharacterized protein. (642 aa)
	D5GDA0_TUBMM	C2H2-type domain-containing protein. (782 aa)
	D5GD47_TUBMM	Uncharacterized protein. (373 aa)
	D5GCB3_TUBMM	Uncharacterized protein. (549 aa)
	D5GBA6_TUBMM	CID domain-containing protein. (409 aa)
	D5GAK5_TUBMM	Uncharacterized protein. (468 aa)
	D5GA69_TUBMM	Protein kinase domain-containing protein. (592 aa)
	D5GA55_TUBMM	Uncharacterized protein. (673 aa)
	D5GA21_TUBMM	Uncharacterized protein. (611 aa)
	D5G9Q8_TUBMM	Fungal_trans domain-containing protein. (817 aa)
	D5G9K1_TUBMM	Uncharacterized protein. (156 aa)
	D5G8A7_TUBMM	RNA_pol_L_2 domain-containing protein. (119 aa)
	D5GJI2_TUBMM	RTR1-type domain-containing protein. (314 aa)
	D5G821_TUBMM	BTB domain-containing protein. (862 aa)
	D5GH70_TUBMM	TFIIB-type domain-containing protein. (346 aa)
	D5G7W3_TUBMM	HTH TFE/IIEalpha-type domain-containing protein. (454 aa)
	D5G7S3_TUBMM	Uncharacterized protein. (265 aa)
	D5G7Q2_TUBMM	Uncharacterized protein. (174 aa)
	D5G7I7_TUBMM	Uncharacterized protein. (422 aa)
	D5G764_TUBMM	Uncharacterized protein. (1062 aa)
	D5G763_TUBMM	RPOLD domain-containing protein. (340 aa)
	D5G675_TUBMM	Uncharacterized protein. (436 aa)
	D5G674_TUBMM	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (620 aa)
	D5G5X0_TUBMM	TAF domain-containing protein. (472 aa)
	D5G5S6_TUBMM	Uncharacterized protein; Belongs to the cyclin family. (367 aa)
	D5G445_TUBMM	Uncharacterized protein. (178 aa)
	D5GIZ4_TUBMM	Uncharacterized protein. (378 aa)
	D5GGQ1_TUBMM	Uncharacterized protein. (493 aa)
	D5GGF6_TUBMM	Uncharacterized protein. (319 aa)
	D5GG44_TUBMM	Uncharacterized protein. (259 aa)
	D5GHF4_TUBMM	Uncharacterized protein. (593 aa)
	D5GFX1_TUBMM	Uncharacterized protein. (468 aa)
	D5GFS9_TUBMM	Uncharacterized protein. (232 aa)
	D5GEV5_TUBMM	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (115 aa)
	D5GEN8_TUBMM	Uncharacterized protein. (816 aa)
	D5GLV5_TUBMM	Uncharacterized protein. (690 aa)
	D5GEN5_TUBMM	Uncharacterized protein. (856 aa)
	D5GEE9_TUBMM	Uncharacterized protein. (666 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G445_TUBMM	D5G5X0_TUBMM	D5G445	D5G5X0	Uncharacterized protein.	TAF domain-containing protein.	0.957
D5G445_TUBMM	D5G674_TUBMM	D5G445	D5G674	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.671
D5G445_TUBMM	D5G675_TUBMM	D5G445	D5G675	Uncharacterized protein.	Uncharacterized protein.	0.671
D5G445_TUBMM	D5G763_TUBMM	D5G445	D5G763	Uncharacterized protein.	RPOLD domain-containing protein.	0.780
D5G445_TUBMM	D5G7Q2_TUBMM	D5G445	D5G7Q2	Uncharacterized protein.	Uncharacterized protein.	0.757
D5G445_TUBMM	D5G7W3_TUBMM	D5G445	D5G7W3	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.745
D5G445_TUBMM	D5G821_TUBMM	D5G445	D5G821	Uncharacterized protein.	BTB domain-containing protein.	0.871
D5G445_TUBMM	D5G8A7_TUBMM	D5G445	D5G8A7	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.704
D5G445_TUBMM	D5G963_TUBMM	D5G445	D5G963	Uncharacterized protein.	Uncharacterized protein.	0.871
D5G445_TUBMM	D5G9K1_TUBMM	D5G445	D5G9K1	Uncharacterized protein.	Uncharacterized protein.	0.745
D5G445_TUBMM	D5GD47_TUBMM	D5G445	D5GD47	Uncharacterized protein.	Uncharacterized protein.	0.721
D5G445_TUBMM	D5GDH6_TUBMM	D5G445	D5GDH6	Uncharacterized protein.	Uncharacterized protein.	0.952
D5G445_TUBMM	D5GEA1_TUBMM	D5G445	D5GEA1	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.611
D5G445_TUBMM	D5GEV5_TUBMM	D5G445	D5GEV5	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.611
D5G445_TUBMM	D5GH70_TUBMM	D5G445	D5GH70	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.796
D5G445_TUBMM	D5GJJ3_TUBMM	D5G445	D5GJJ3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.737
D5G445_TUBMM	D5GL64_TUBMM	D5G445	D5GL64	Uncharacterized protein.	Uncharacterized protein.	0.611
D5G445_TUBMM	D5GLV0_TUBMM	D5G445	D5GLV0	Uncharacterized protein.	Uncharacterized protein.	0.957
D5G445_TUBMM	D5GLV5_TUBMM	D5G445	D5GLV5	Uncharacterized protein.	Uncharacterized protein.	0.957
D5G445_TUBMM	D5GM47_TUBMM	D5G445	D5GM47	Uncharacterized protein.	Uncharacterized protein.	0.740