(26 nodes) RNA Polymerase III Transcription network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5GKL8_TUBMM	Uncharacterized protein. (194 aa)
	D5GKC0_TUBMM	RPOLD domain-containing protein. (377 aa)
	D5GJN7_TUBMM	Uncharacterized protein. (434 aa)
	D5GJN8_TUBMM	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (660 aa)
	D5GG62_TUBMM	Uncharacterized protein. (699 aa)
	D5GDS8_TUBMM	RNA_pol_Rpb1_5 domain-containing protein. (449 aa)
	D5GDS7_TUBMM	Uncharacterized protein. (442 aa)
	D5GAW4_TUBMM	SANT domain-containing protein. (664 aa)
	D5GAS5_TUBMM	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (643 aa)
	D5G9K1_TUBMM	Uncharacterized protein. (156 aa)
	D5G9H5_TUBMM	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (111 aa)
	D5G963_TUBMM	Uncharacterized protein. (253 aa)
	D5GNK2_TUBMM	Uncharacterized protein. (76 aa)
	D5GNK6_TUBMM	Uncharacterized protein. (220 aa)
	D5GNM5_TUBMM	TFIIB-type domain-containing protein. (553 aa)
	D5G8Y9_TUBMM	Uncharacterized protein. (581 aa)
	D5G493_TUBMM	ENDO3c domain-containing protein. (339 aa)
	D5G7Q2_TUBMM	Uncharacterized protein. (174 aa)
	D5G821_TUBMM	BTB domain-containing protein. (862 aa)
	D5G879_TUBMM	Uncharacterized protein. (427 aa)
	D5G8B9_TUBMM	Uncharacterized protein. (987 aa)
	D5G8S5_TUBMM	Uncharacterized protein. (420 aa)
	D5G8S6_TUBMM	Uncharacterized protein. (631 aa)
	D5GMC8_TUBMM	Uncharacterized protein. (73 aa)
	D5GMB7_TUBMM	Uncharacterized protein. (954 aa)
	D5GKX1_TUBMM	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (303 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G7Q2_TUBMM	D5G821_TUBMM	D5G7Q2	D5G821	Uncharacterized protein.	BTB domain-containing protein.	0.928
D5G7Q2_TUBMM	D5G879_TUBMM	D5G7Q2	D5G879	Uncharacterized protein.	Uncharacterized protein.	0.982
D5G7Q2_TUBMM	D5G8B9_TUBMM	D5G7Q2	D5G8B9	Uncharacterized protein.	Uncharacterized protein.	0.742
D5G7Q2_TUBMM	D5G8S6_TUBMM	D5G7Q2	D5G8S6	Uncharacterized protein.	Uncharacterized protein.	0.998
D5G7Q2_TUBMM	D5G8Y9_TUBMM	D5G7Q2	D5G8Y9	Uncharacterized protein.	Uncharacterized protein.	0.988
D5G7Q2_TUBMM	D5G963_TUBMM	D5G7Q2	D5G963	Uncharacterized protein.	Uncharacterized protein.	0.974
D5G7Q2_TUBMM	D5G9H5_TUBMM	D5G7Q2	D5G9H5	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.998
D5G7Q2_TUBMM	D5G9K1_TUBMM	D5G7Q2	D5G9K1	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G7Q2_TUBMM	D5GAS5_TUBMM	D5G7Q2	D5GAS5	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
D5G7Q2_TUBMM	D5GAW4_TUBMM	D5G7Q2	D5GAW4	Uncharacterized protein.	SANT domain-containing protein.	0.929
D5G7Q2_TUBMM	D5GDS7_TUBMM	D5G7Q2	D5GDS7	Uncharacterized protein.	Uncharacterized protein.	0.958
D5G7Q2_TUBMM	D5GDS8_TUBMM	D5G7Q2	D5GDS8	Uncharacterized protein.	RNA_pol_Rpb1_5 domain-containing protein.	0.958
D5G7Q2_TUBMM	D5GJN7_TUBMM	D5G7Q2	D5GJN7	Uncharacterized protein.	Uncharacterized protein.	0.951
D5G7Q2_TUBMM	D5GJN8_TUBMM	D5G7Q2	D5GJN8	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.951
D5G7Q2_TUBMM	D5GKC0_TUBMM	D5G7Q2	D5GKC0	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
D5G7Q2_TUBMM	D5GKL8_TUBMM	D5G7Q2	D5GKL8	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G7Q2_TUBMM	D5GKX1_TUBMM	D5G7Q2	D5GKX1	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.999
D5G7Q2_TUBMM	D5GMC8_TUBMM	D5G7Q2	D5GMC8	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G7Q2_TUBMM	D5GNK2_TUBMM	D5G7Q2	D5GNK2	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G7Q2_TUBMM	D5GNK6_TUBMM	D5G7Q2	D5GNK6	Uncharacterized protein.	Uncharacterized protein.	0.999