(12 nodes) cheY-homologous receiver domain network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G4P6_TUBMM	Response regulatory domain-containing protein. (512 aa)
	D5G5M9_TUBMM	Uncharacterized protein. (890 aa)
	D5GCS1_TUBMM	Uncharacterized protein. (1953 aa)
	D5GD35_TUBMM	Response regulatory domain-containing protein. (601 aa)
	D5GEY7_TUBMM	Uncharacterized protein. (1966 aa)
	D5GFS0_TUBMM	Uncharacterized protein. (724 aa)
	D5GG06_TUBMM	Uncharacterized protein. (1066 aa)
	D5GIJ2_TUBMM	Uncharacterized protein. (1407 aa)
	D5GKW4_TUBMM	Uncharacterized protein. (1164 aa)
	D5GL95_TUBMM	Uncharacterized protein. (1260 aa)
	D5GNM8_TUBMM	Uncharacterized protein. (1775 aa)
	D5GNY8_TUBMM	Uncharacterized protein. (1221 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G4P6_TUBMM	D5GD35_TUBMM	D5G4P6	D5GD35	Response regulatory domain-containing protein.	Response regulatory domain-containing protein.	0.709
D5G4P6_TUBMM	D5GG06_TUBMM	D5G4P6	D5GG06	Response regulatory domain-containing protein.	Uncharacterized protein.	0.600
D5GD35_TUBMM	D5G4P6_TUBMM	D5GD35	D5G4P6	Response regulatory domain-containing protein.	Response regulatory domain-containing protein.	0.709
D5GD35_TUBMM	D5GG06_TUBMM	D5GD35	D5GG06	Response regulatory domain-containing protein.	Uncharacterized protein.	0.472
D5GG06_TUBMM	D5G4P6_TUBMM	D5GG06	D5G4P6	Uncharacterized protein.	Response regulatory domain-containing protein.	0.600
D5GG06_TUBMM	D5GD35_TUBMM	D5GG06	D5GD35	Uncharacterized protein.	Response regulatory domain-containing protein.	0.472