(6 nodes) Other types of O-glycan biosynthesis network (Tuber melanosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G5U6_TUBMM	Uncharacterized protein. (768 aa)
	D5G7H7_TUBMM	Uncharacterized protein. (594 aa)
	D5G7U5_TUBMM	Uncharacterized protein. (956 aa)
	D5GJB6_TUBMM	Uncharacterized protein. (390 aa)
	D5GMI4_TUBMM	Uncharacterized protein. (403 aa)
	D5GNM7_TUBMM	Uncharacterized protein. (387 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G5U6_TUBMM	D5G7H7_TUBMM	D5G5U6	D5G7H7	Uncharacterized protein.	Uncharacterized protein.	0.954
D5G5U6_TUBMM	D5G7U5_TUBMM	D5G5U6	D5G7U5	Uncharacterized protein.	Uncharacterized protein.	0.958
D5G7H7_TUBMM	D5G5U6_TUBMM	D5G7H7	D5G5U6	Uncharacterized protein.	Uncharacterized protein.	0.954
D5G7H7_TUBMM	D5G7U5_TUBMM	D5G7H7	D5G7U5	Uncharacterized protein.	Uncharacterized protein.	0.986
D5G7U5_TUBMM	D5G5U6_TUBMM	D5G7U5	D5G5U6	Uncharacterized protein.	Uncharacterized protein.	0.958
D5G7U5_TUBMM	D5G7H7_TUBMM	D5G7U5	D5G7H7	Uncharacterized protein.	Uncharacterized protein.	0.986
D5GJB6_TUBMM	D5GMI4_TUBMM	D5GJB6	D5GMI4	Uncharacterized protein.	Uncharacterized protein.	0.904
D5GJB6_TUBMM	D5GNM7_TUBMM	D5GJB6	D5GNM7	Uncharacterized protein.	Uncharacterized protein.	0.903
D5GMI4_TUBMM	D5GJB6_TUBMM	D5GMI4	D5GJB6	Uncharacterized protein.	Uncharacterized protein.	0.904
D5GMI4_TUBMM	D5GNM7_TUBMM	D5GMI4	D5GNM7	Uncharacterized protein.	Uncharacterized protein.	0.903
D5GNM7_TUBMM	D5GJB6_TUBMM	D5GNM7	D5GJB6	Uncharacterized protein.	Uncharacterized protein.	0.903
D5GNM7_TUBMM	D5GMI4_TUBMM	D5GNM7	D5GMI4	Uncharacterized protein.	Uncharacterized protein.	0.903