83 items (Tuber melanosporum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D5G3U0_TUBMM	Uncharacterized protein. (637 aa)
	D5G3V5_TUBMM	Uncharacterized protein. (560 aa)
	D5G3W5_TUBMM	Cnd3 domain-containing protein. (1020 aa)
	D5G3X1_TUBMM	DNA helicase; Belongs to the MCM family. (720 aa)
	MCM7	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (783 aa)
	D5G4M6_TUBMM	Uncharacterized protein. (614 aa)
	D5G552_TUBMM	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1137 aa)
	D5G553_TUBMM	Protein kinase domain-containing protein. (558 aa)
	D5G5B7_TUBMM	Protein kinase domain-containing protein. (535 aa)
	D5G670_TUBMM	Protein kinase domain-containing protein. (525 aa)
	D5G696_TUBMM	Uncharacterized protein. (336 aa)
	D5G6M0_TUBMM	CULLIN_2 domain-containing protein; Belongs to the cullin family. (768 aa)
	D5G6T7_TUBMM	Uncharacterized protein. (622 aa)
	D5G749_TUBMM	TPR_REGION domain-containing protein. (818 aa)
	D5G7A7_TUBMM	RING-type domain-containing protein. (112 aa)
	D5G9G0_TUBMM	F-box domain-containing protein. (605 aa)
	D5G9S9_TUBMM	WD_REPEATS_REGION domain-containing protein. (587 aa)
	D5GA54_TUBMM	WD_REPEATS_REGION domain-containing protein. (569 aa)
	D5GAA8_TUBMM	RFX-type winged-helix domain-containing protein. (744 aa)
	D5GAC2_TUBMM	Uncharacterized protein. (575 aa)
	D5GAV6_TUBMM	DNA helicase; Belongs to the MCM family. (847 aa)
	D5GB11_TUBMM	Protein kinase domain-containing protein. (1509 aa)
	D5GB51_TUBMM	Uncharacterized protein. (660 aa)
	D5GBB1_TUBMM	Uncharacterized protein. (717 aa)
	D5GBC2_TUBMM	Structural maintenance of chromosomes protein. (1194 aa)
	D5GBI8_TUBMM	Uncharacterized protein. (335 aa)
	D5GBN4_TUBMM	Protein kinase domain-containing protein. (965 aa)
	D5GBZ4_TUBMM	Uncharacterized protein; Belongs to the cyclin family. (587 aa)
	D5GC05_TUBMM	SCD domain-containing protein. (1267 aa)
	D5GC39_TUBMM	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (351 aa)
	D5GCD6_TUBMM	Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. (669 aa)
	D5GCG5_TUBMM	DNA helicase; Belongs to the MCM family. (772 aa)
	D5GCN7_TUBMM	RING-type domain-containing protein. (86 aa)
	D5GCW3_TUBMM	DBF4-type domain-containing protein. (632 aa)
	D5GDP3_TUBMM	Structural maintenance of chromosomes protein. (1482 aa)
	D5GDP7_TUBMM	Uncharacterized protein. (307 aa)
	D5GE48_TUBMM	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (231 aa)
	D5GE70_TUBMM	SMC hinge domain-containing protein. (1111 aa)
	D5GEE0_TUBMM	Uncharacterized protein; Belongs to the SKP1 family. (160 aa)
	D5GF38_TUBMM	Uncharacterized protein. (219 aa)
	D5GF80_TUBMM	Uncharacterized protein. (621 aa)
	D5GF92_TUBMM	Uncharacterized protein. (1100 aa)
	D5GFB7_TUBMM	CULLIN_2 domain-containing protein; Belongs to the cullin family. (565 aa)
	D5GFH3_TUBMM	Rhodanese domain-containing protein. (546 aa)
	D5GFI1_TUBMM	DNA helicase; Belongs to the MCM family. (797 aa)
	D5GFS1_TUBMM	Protein kinase domain-containing protein. (605 aa)
	D5GGN1_TUBMM	Uncharacterized protein. (1892 aa)
	D5GGQ1_TUBMM	Uncharacterized protein. (493 aa)
	D5GGW9_TUBMM	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (236 aa)
	D5GHC6_TUBMM	Condensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. (827 aa)
	D5GHH0_TUBMM	Structural maintenance of chromosomes protein. (1245 aa)
	D5GIC9_TUBMM	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (112 aa)
	D5GID5_TUBMM	Serine/threonine-protein kinase. (631 aa)
	D5GJ08_TUBMM	Uncharacterized protein. (715 aa)
	D5GJ33_TUBMM	Rab-GAP TBC domain-containing protein. (380 aa)
	D5GJL0_TUBMM	Uncharacterized protein. (681 aa)
	D5GK29_TUBMM	AAA_16 domain-containing protein. (424 aa)
	D5GKD6_TUBMM	Uncharacterized protein. (793 aa)
	D5GKL9_TUBMM	Protein kinase domain-containing protein. (827 aa)
	D5GKQ4_TUBMM	Peptidase C50 domain-containing protein. (2097 aa)
	D5GKR4_TUBMM	WD_REPEATS_REGION domain-containing protein. (539 aa)
	D5GL54_TUBMM	Sister chromatid cohesion protein. (1625 aa)
	D5GL82_TUBMM	DNA helicase; Belongs to the MCM family. (888 aa)
	D5GLG6_TUBMM	Uncharacterized protein. (300 aa)
	D5GLU0_TUBMM	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (309 aa)
	D5GM16_TUBMM	Uncharacterized protein. (659 aa)
	D5GM67_TUBMM	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (427 aa)
	D5GM69_TUBMM	Uncharacterized protein. (874 aa)
	D5GM99_TUBMM	ANAPC5 domain-containing protein. (739 aa)
	D5GMH8_TUBMM	Serine/threonine-protein phosphatase. (306 aa)
	D5GML9_TUBMM	Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (413 aa)
	D5GN68_TUBMM	TYR_PHOSPHATASE_2 domain-containing protein. (618 aa)
	D5GNB1_TUBMM	Uncharacterized protein. (748 aa)
	D5GNP2_TUBMM	Uncharacterized protein. (1044 aa)
	D5GP12_TUBMM	Uncharacterized protein. (400 aa)
	D5GPI5_TUBMM	HORMA domain-containing protein. (216 aa)
	D5GPI9_TUBMM	MRC1 domain-containing protein. (1224 aa)
	D5GPN2_TUBMM	Uncharacterized protein. (621 aa)
	D5GPU1_TUBMM	Cyclin N-terminal domain-containing protein. (381 aa)
	D5GPU3_TUBMM	Uncharacterized protein. (1077 aa)
	D5GQ01_TUBMM	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (341 aa)
	D5GQ49_TUBMM	MADS-box domain-containing protein. (248 aa)
	D5GQ72_TUBMM	Uncharacterized protein. (623 aa)

Your Current Organism:

Tuber melanosporum

NCBI taxonomy Id: 656061
Other names: T. melanosporum Mel28, Tuber melanosporum Mel28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D5G3U0_TUBMM	D5G3V5_TUBMM	D5G3U0	D5G3V5	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G3U0_TUBMM	D5G749_TUBMM	D5G3U0	D5G749	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.495
D5G3U0_TUBMM	D5G9S9_TUBMM	D5G3U0	D5G9S9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.985
D5G3U0_TUBMM	D5GBI8_TUBMM	D5G3U0	D5GBI8	Uncharacterized protein.	Uncharacterized protein.	0.961
D5G3U0_TUBMM	D5GBZ4_TUBMM	D5G3U0	D5GBZ4	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.560
D5G3U0_TUBMM	D5GCN7_TUBMM	D5G3U0	D5GCN7	Uncharacterized protein.	RING-type domain-containing protein.	0.999
D5G3U0_TUBMM	D5GE48_TUBMM	D5G3U0	D5GE48	Uncharacterized protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.999
D5G3U0_TUBMM	D5GF92_TUBMM	D5G3U0	D5GF92	Uncharacterized protein.	Uncharacterized protein.	0.988
D5G3U0_TUBMM	D5GFB7_TUBMM	D5G3U0	D5GFB7	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
D5G3U0_TUBMM	D5GGN1_TUBMM	D5G3U0	D5GGN1	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G3U0_TUBMM	D5GGW9_TUBMM	D5G3U0	D5GGW9	Uncharacterized protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.954
D5G3U0_TUBMM	D5GID5_TUBMM	D5G3U0	D5GID5	Uncharacterized protein.	Serine/threonine-protein kinase.	0.986
D5G3U0_TUBMM	D5GJ33_TUBMM	D5G3U0	D5GJ33	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.457
D5G3U0_TUBMM	D5GKD6_TUBMM	D5G3U0	D5GKD6	Uncharacterized protein.	Uncharacterized protein.	0.999
D5G3U0_TUBMM	D5GKQ4_TUBMM	D5G3U0	D5GKQ4	Uncharacterized protein.	Peptidase C50 domain-containing protein.	0.881
D5G3U0_TUBMM	D5GKR4_TUBMM	D5G3U0	D5GKR4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.992
D5G3U0_TUBMM	D5GLU0_TUBMM	D5G3U0	D5GLU0	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.872
D5G3U0_TUBMM	D5GM16_TUBMM	D5G3U0	D5GM16	Uncharacterized protein.	Uncharacterized protein.	0.926
D5G3U0_TUBMM	D5GM99_TUBMM	D5G3U0	D5GM99	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.999
D5G3U0_TUBMM	D5GMH8_TUBMM	D5G3U0	D5GMH8	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.849