(12 nodes) Mixed, incl. PXA domain, and Ubiquitin-dependent endocytosis network (Pseudogymnoascus destructans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GMDG_05991	Uncharacterized protein. (1231 aa)
	GMDG_01193	CENP-T_C domain-containing protein. (572 aa)
	GMDG_07508	Uncharacterized protein. (382 aa)
	GMDG_06970	Uncharacterized protein. (169 aa)
	GMDG_01828	Arrestin_C domain-containing protein. (636 aa)
	GMDG_07914	E3 ubiquitin-protein ligase. (816 aa)
	GMDG_02452	LDB19 domain-containing protein. (450 aa)
	GMDG_08473	Uncharacterized protein. (754 aa)
	GMDG_00450	Uncharacterized protein. (1233 aa)
	GMDG_03823	Uncharacterized protein. (482 aa)
	GMDG_04168	PXA domain-containing protein. (993 aa)
	GMDG_00720	Zn(2)-C6 fungal-type domain-containing protein. (969 aa)

Your Current Organism:

Pseudogymnoascus destructans

NCBI taxonomy Id: 658429
Other names: Geomyces destructans 20631-21, P. destructans 20631-21, Pseudogymnoascus destructans 20631-21

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GMDG_00450	GMDG_03823	L8G4S2	L8G9C9	Uncharacterized protein.	Uncharacterized protein.	0.565
GMDG_00450	GMDG_04168	L8G4S2	L8G9E3	Uncharacterized protein.	PXA domain-containing protein.	0.493
GMDG_00450	GMDG_05991	L8G4S2	L8FQC6	Uncharacterized protein.	Uncharacterized protein.	0.538
GMDG_00450	GMDG_06970	L8G4S2	L8FYG9	Uncharacterized protein.	Uncharacterized protein.	0.538
GMDG_00450	GMDG_07508	L8G4S2	L8FXH3	Uncharacterized protein.	Uncharacterized protein.	0.538
GMDG_00450	GMDG_07914	L8G4S2	L8G0S8	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.538
GMDG_00720	GMDG_05991	L8GA56	L8FQC6	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.668
GMDG_00720	GMDG_06970	L8GA56	L8FYG9	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.668
GMDG_00720	GMDG_07508	L8GA56	L8FXH3	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.668
GMDG_00720	GMDG_07914	L8GA56	L8G0S8	Zn(2)-C6 fungal-type domain-containing protein.	E3 ubiquitin-protein ligase.	0.668
GMDG_01193	GMDG_05991	L8FQG4	L8FQC6	CENP-T_C domain-containing protein.	Uncharacterized protein.	0.826
GMDG_01193	GMDG_06970	L8FQG4	L8FYG9	CENP-T_C domain-containing protein.	Uncharacterized protein.	0.826
GMDG_01193	GMDG_07508	L8FQG4	L8FXH3	CENP-T_C domain-containing protein.	Uncharacterized protein.	0.826
GMDG_01193	GMDG_07914	L8FQG4	L8G0S8	CENP-T_C domain-containing protein.	E3 ubiquitin-protein ligase.	0.826
GMDG_01828	GMDG_02452	L8FYU6	L8G1T2	Arrestin_C domain-containing protein.	LDB19 domain-containing protein.	0.418
GMDG_01828	GMDG_05991	L8FYU6	L8FQC6	Arrestin_C domain-containing protein.	Uncharacterized protein.	0.605
GMDG_01828	GMDG_06970	L8FYU6	L8FYG9	Arrestin_C domain-containing protein.	Uncharacterized protein.	0.708
GMDG_01828	GMDG_07508	L8FYU6	L8FXH3	Arrestin_C domain-containing protein.	Uncharacterized protein.	0.605
GMDG_01828	GMDG_07914	L8FYU6	L8G0S8	Arrestin_C domain-containing protein.	E3 ubiquitin-protein ligase.	0.777
GMDG_02452	GMDG_01828	L8G1T2	L8FYU6	LDB19 domain-containing protein.	Arrestin_C domain-containing protein.	0.418