17 items (Pseudogymnoascus destructans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GMDG_02005	Zds_C domain-containing protein. (919 aa)
	GMDG_05210	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (721 aa)
	GMDG_01369	CDC7 protein kinase. (479 aa)
	GMDG_07152	Rhodanese domain-containing protein. (553 aa)
	GMDG_07416	Uncharacterized protein. (893 aa)
	GMDG_02035	Cell division control protein; Belongs to the CDC6/cdc18 family. (641 aa)
	GMDG_01612	PLK protein kinase. (974 aa)
	GMDG_02017	CMGC/CDK/CDC2 protein kinase; Belongs to the protein kinase superfamily. (330 aa)
	GMDG_08204	STE/STE7 protein kinase. (621 aa)
	GMDG_02134	DNA repair protein rad9; Acts in DNA repair and mutagenesis. Involved in promoting resistance to ionizing radiation and UV light, as well as regulating cell cycle progression after irradiation. (453 aa)
	GMDG_02167	CAMK/CAMKL/CHK1 protein kinase. (548 aa)
	GMDG_01923	CMGC/CDK/CDK5 protein kinase; Belongs to the protein kinase superfamily. (318 aa)
	GMDG_07887	Cell division cycle 14. (634 aa)
	GMDG_08472	Uncharacterized protein. (763 aa)
	GMDG_03211	Uncharacterized protein. (338 aa)
	GMDG_03210	Uncharacterized protein. (305 aa)
	GMDG_04867	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (482 aa)

Your Current Organism:

Pseudogymnoascus destructans

NCBI taxonomy Id: 658429
Other names: Geomyces destructans 20631-21, P. destructans 20631-21, Pseudogymnoascus destructans 20631-21

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GMDG_01369	GMDG_01612	L8FS89	L8FZ98	CDC7 protein kinase.	PLK protein kinase.	0.705
GMDG_01369	GMDG_01923	L8FS89	L8G1V7	CDC7 protein kinase.	CMGC/CDK/CDK5 protein kinase; Belongs to the protein kinase superfamily.	0.888
GMDG_01369	GMDG_02017	L8FS89	L8G0B0	CDC7 protein kinase.	CMGC/CDK/CDC2 protein kinase; Belongs to the protein kinase superfamily.	0.888
GMDG_01369	GMDG_02035	L8FS89	L8FZ04	CDC7 protein kinase.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.871
GMDG_01369	GMDG_02134	L8FS89	L8G120	CDC7 protein kinase.	DNA repair protein rad9; Acts in DNA repair and mutagenesis. Involved in promoting resistance to ionizing radiation and UV light, as well as regulating cell cycle progression after irradiation.	0.467
GMDG_01369	GMDG_02167	L8FS89	L8G1E9	CDC7 protein kinase.	CAMK/CAMKL/CHK1 protein kinase.	0.860
GMDG_01369	GMDG_07416	L8FS89	L8FY62	CDC7 protein kinase.	Uncharacterized protein.	0.441
GMDG_01369	GMDG_07887	L8FS89	L8G2T0	CDC7 protein kinase.	Cell division cycle 14.	0.475
GMDG_01369	GMDG_08472	L8FS89	L8G347	CDC7 protein kinase.	Uncharacterized protein.	0.655
GMDG_01612	GMDG_01369	L8FZ98	L8FS89	PLK protein kinase.	CDC7 protein kinase.	0.705
GMDG_01612	GMDG_01923	L8FZ98	L8G1V7	PLK protein kinase.	CMGC/CDK/CDK5 protein kinase; Belongs to the protein kinase superfamily.	0.935
GMDG_01612	GMDG_02017	L8FZ98	L8G0B0	PLK protein kinase.	CMGC/CDK/CDC2 protein kinase; Belongs to the protein kinase superfamily.	0.935
GMDG_01612	GMDG_02035	L8FZ98	L8FZ04	PLK protein kinase.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.566
GMDG_01612	GMDG_04867	L8FZ98	L8GBN5	PLK protein kinase.	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.966
GMDG_01612	GMDG_07152	L8FZ98	L8FVY1	PLK protein kinase.	Rhodanese domain-containing protein.	0.997
GMDG_01612	GMDG_07887	L8FZ98	L8G2T0	PLK protein kinase.	Cell division cycle 14.	0.975
GMDG_01612	GMDG_08472	L8FZ98	L8G347	PLK protein kinase.	Uncharacterized protein.	0.566
GMDG_01923	GMDG_01369	L8G1V7	L8FS89	CMGC/CDK/CDK5 protein kinase; Belongs to the protein kinase superfamily.	CDC7 protein kinase.	0.888
GMDG_01923	GMDG_01612	L8G1V7	L8FZ98	CMGC/CDK/CDK5 protein kinase; Belongs to the protein kinase superfamily.	PLK protein kinase.	0.935
GMDG_01923	GMDG_02005	L8G1V7	L8G2F6	CMGC/CDK/CDK5 protein kinase; Belongs to the protein kinase superfamily.	Zds_C domain-containing protein.	0.445