24 items (Pseudogymnoascus destructans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GMDG_00379	Uncharacterized protein. (784 aa)
	GMDG_00433	Splicing factor 3A subunit 2. (240 aa)
	GMDG_02421	WW domain-containing protein. (573 aa)
	GMDG_02046	Sm domain-containing protein. (205 aa)
	GMDG_08125	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (98 aa)
	GMDG_02437	Uncharacterized protein. (284 aa)
	GMDG_01797	Uncharacterized protein. (704 aa)
	GMDG_07606	Splicing factor 3A subunit 3. (498 aa)
	GMDG_01778	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	GMDG_06935	Uncharacterized protein. (587 aa)
	GMDG_06901	Sm domain-containing protein. (137 aa)
	GMDG_05987	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (559 aa)
	GMDG_01424	Uncharacterized protein. (777 aa)
	GMDG_06136	RRM domain-containing protein. (213 aa)
	GMDG_01221	Uncharacterized protein. (558 aa)
	GMDG_05988	SF3b1 domain-containing protein. (1223 aa)
	GMDG_01129	Pre-mRNA-splicing factor clf1. (671 aa)
	GMDG_00991	Uncharacterized protein. (352 aa)
	GMDG_00728	Small nuclear ribonucleoprotein G. (83 aa)
	GMDG_04233	RRM domain-containing protein. (489 aa)
	GMDG_04151	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (222 aa)
	GMDG_00323	Uncharacterized protein. (611 aa)
	GMDG_04570	PSP domain-containing protein. (574 aa)
	GMDG_04725	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (139 aa)

Your Current Organism:

Pseudogymnoascus destructans

NCBI taxonomy Id: 658429
Other names: Geomyces destructans 20631-21, P. destructans 20631-21, Pseudogymnoascus destructans 20631-21

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GMDG_00323	GMDG_00379	L8G431	L8G6Z6	Uncharacterized protein.	Uncharacterized protein.	0.927
GMDG_00323	GMDG_00433	L8G431	L8G3U0	Uncharacterized protein.	Splicing factor 3A subunit 2.	0.978
GMDG_00323	GMDG_00991	L8G431	L8FP13	Uncharacterized protein.	Uncharacterized protein.	0.621
GMDG_00323	GMDG_01221	L8G431	L8FRZ0	Uncharacterized protein.	Uncharacterized protein.	0.976
GMDG_00323	GMDG_01424	L8G431	L8FT38	Uncharacterized protein.	Uncharacterized protein.	0.861
GMDG_00323	GMDG_01778	L8G431	L8FXP4	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.522
GMDG_00323	GMDG_01797	L8G431	L8G113	Uncharacterized protein.	Uncharacterized protein.	0.942
GMDG_00323	GMDG_02421	L8G431	L8G303	Uncharacterized protein.	WW domain-containing protein.	0.511
GMDG_00323	GMDG_02437	L8G431	L8G1R7	Uncharacterized protein.	Uncharacterized protein.	0.849
GMDG_00323	GMDG_04151	L8G431	L8G8W9	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.626
GMDG_00323	GMDG_04233	L8G431	L8G9K8	Uncharacterized protein.	RRM domain-containing protein.	0.618
GMDG_00323	GMDG_04570	L8G431	L8GDJ7	Uncharacterized protein.	PSP domain-containing protein.	0.552
GMDG_00323	GMDG_05987	L8G431	L8FTY4	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.993
GMDG_00323	GMDG_05988	L8G431	L8FQJ2	Uncharacterized protein.	SF3b1 domain-containing protein.	0.897
GMDG_00323	GMDG_06935	L8G431	L8FW19	Uncharacterized protein.	Uncharacterized protein.	0.626
GMDG_00323	GMDG_07606	L8G431	L8FZC6	Uncharacterized protein.	Splicing factor 3A subunit 3.	0.971
GMDG_00323	GMDG_08125	L8G431	L8G1Z8	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.646
GMDG_00379	GMDG_00323	L8G6Z6	L8G431	Uncharacterized protein.	Uncharacterized protein.	0.927
GMDG_00379	GMDG_00433	L8G6Z6	L8G3U0	Uncharacterized protein.	Splicing factor 3A subunit 2.	0.846
GMDG_00379	GMDG_00728	L8G6Z6	L8G9S2	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.863