29 items (Pseudogymnoascus destructans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GMDG_06964	Ubiquitin-like domain-containing protein. (209 aa)
	GMDG_06897	Ubiquitin carboxyl-terminal hydrolase. (579 aa)
	GMDG_06763	Ubiquitin-like domain-containing protein. (304 aa)
	GMDG_01346	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	GMDG_06145	UBX domain-containing protein. (555 aa)
	GMDG_01191	UBX domain-containing protein. (442 aa)
	GMDG_06325	UV excision repair protein Rad23. (397 aa)
	GMDG_06249	Ubiquitin-like domain-containing protein. (267 aa)
	GMDG_05350	Uncharacterized protein. (444 aa)
	GMDG_05855	UBD domain-containing protein. (269 aa)
	GMDG_00097	Autophagy-related protein. (121 aa)
	GMDG_01122	Ubiquitin-like domain-containing protein. (102 aa)
	GMDG_01060	Uncharacterized protein. (651 aa)
	GMDG_00078	Uncharacterized protein. (243 aa)
	GMDG_07604	Uncharacterized protein. (408 aa)
	GMDG_02697	C2H2-type domain-containing protein. (317 aa)
	GMDG_02009	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (146 aa)
	GMDG_03004	Uncharacterized protein. (2194 aa)
	GMDG_03391	Polyubiquitin. (381 aa)
	GMDG_04288	Ubiquitin-like domain-containing protein. (295 aa)
	GMDG_04333	Uncharacterized protein. (509 aa)
	GMDG_04775	Nuclear protein localization protein 4. (640 aa)
	GMDG_00357	Ubiquitin-like domain-containing protein. (516 aa)
	GMDG_02038	UBX domain-containing protein. (484 aa)
	GMDG_02240	Uncharacterized protein. (227 aa)
	GMDG_01941	Uncharacterized protein. (299 aa)
	GMDG_07035	Ubiquitin-like domain-containing protein. (477 aa)
	GMDG_06910	UBX domain-containing protein. (511 aa)
	GMDG_07162	Ubiquitin-like domain-containing protein. (146 aa)

Your Current Organism:

Pseudogymnoascus destructans

NCBI taxonomy Id: 658429
Other names: Geomyces destructans 20631-21, P. destructans 20631-21, Pseudogymnoascus destructans 20631-21

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GMDG_00097	GMDG_01122	L8FPV1	L8FPJ3	Autophagy-related protein.	Ubiquitin-like domain-containing protein.	0.410
GMDG_00097	GMDG_01346	L8FPV1	L8FSG6	Autophagy-related protein.	Ubiquitin-40S ribosomal protein S27a.	0.706
GMDG_00097	GMDG_02009	L8FPV1	L8FYQ8	Autophagy-related protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.942
GMDG_00097	GMDG_02240	L8FPV1	L8G0Z3	Autophagy-related protein.	Uncharacterized protein.	0.408
GMDG_00097	GMDG_03391	L8FPV1	L8G786	Autophagy-related protein.	Polyubiquitin.	0.848
GMDG_00097	GMDG_05350	L8FPV1	L8FRE7	Autophagy-related protein.	Uncharacterized protein.	0.709
GMDG_00097	GMDG_06325	L8FPV1	L8FRT1	Autophagy-related protein.	UV excision repair protein Rad23.	0.636
GMDG_00097	GMDG_06763	L8FPV1	L8FU04	Autophagy-related protein.	Ubiquitin-like domain-containing protein.	0.663
GMDG_00097	GMDG_07162	L8FPV1	L8FVZ1	Autophagy-related protein.	Ubiquitin-like domain-containing protein.	0.652
GMDG_00357	GMDG_03391	L8G0E9	L8G786	Ubiquitin-like domain-containing protein.	Polyubiquitin.	0.479
GMDG_00357	GMDG_04775	L8G0E9	L8GBN9	Ubiquitin-like domain-containing protein.	Nuclear protein localization protein 4.	0.507
GMDG_01122	GMDG_00097	L8FPJ3	L8FPV1	Ubiquitin-like domain-containing protein.	Autophagy-related protein.	0.410
GMDG_01122	GMDG_01346	L8FPJ3	L8FSG6	Ubiquitin-like domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.799
GMDG_01122	GMDG_02009	L8FPJ3	L8FYQ8	Ubiquitin-like domain-containing protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.451
GMDG_01122	GMDG_02240	L8FPJ3	L8G0Z3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.452
GMDG_01122	GMDG_03391	L8FPJ3	L8G786	Ubiquitin-like domain-containing protein.	Polyubiquitin.	0.883
GMDG_01122	GMDG_05350	L8FPJ3	L8FRE7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.808
GMDG_01122	GMDG_06325	L8FPJ3	L8FRT1	Ubiquitin-like domain-containing protein.	UV excision repair protein Rad23.	0.884
GMDG_01122	GMDG_06763	L8FPJ3	L8FU04	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.882
GMDG_01122	GMDG_06897	L8FPJ3	L8FUK0	Ubiquitin-like domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.496