(24 nodes) Transport of Mature mRNA Derived from an Intronless Transcript network (Pseudogymnoascus destructans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GMDG_08184	RanBD1 domain-containing protein. (278 aa)
	GMDG_02371	Peptidase S59 domain-containing protein. (1982 aa)
	GMDG_04309	Fip1 domain-containing protein. (333 aa)
	GMDG_04600	Nup188_C domain-containing protein. (1836 aa)
	GMDG_03807	Uncharacterized protein. (1384 aa)
	GMDG_03931	Uncharacterized protein. (1204 aa)
	GMDG_03326	Uncharacterized protein. (659 aa)
	GMDG_02671	Uncharacterized protein. (1212 aa)
	GMDG_08180	Uncharacterized protein. (864 aa)
	GMDG_02376	TPR_MLP1_2 domain-containing protein. (2024 aa)
	GMDG_02441	Uncharacterized protein. (1668 aa)
	GMDG_01340	C3H1-type domain-containing protein. (558 aa)
	GMDG_01712	Uncharacterized protein. (395 aa)
	GMDG_07884	Nsp1_C domain-containing protein. (660 aa)
	GMDG_07790	WD_REPEATS_REGION domain-containing protein. (356 aa)
	GMDG_00061	Uncharacterized protein. (1060 aa)
	GMDG_05718	RRM domain-containing protein. (252 aa)
	GMDG_08510	Nup54 domain-containing protein. (405 aa)
	GMDG_06346	Uncharacterized protein. (892 aa)
	GMDG_01123	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1061 aa)
	GMDG_06924	NUP214 domain-containing protein. (1485 aa)
	GMDG_02069	RRM domain-containing protein. (312 aa)
	GMDG_08064	Uncharacterized protein. (347 aa)
	GMDG_02609	RanBD1 domain-containing protein. (533 aa)

Your Current Organism:

Pseudogymnoascus destructans

NCBI taxonomy Id: 658429
Other names: Geomyces destructans 20631-21, P. destructans 20631-21, Pseudogymnoascus destructans 20631-21

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GMDG_00061	GMDG_01123	L8FLC8	L8FT57	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.994
GMDG_00061	GMDG_01340	L8FLC8	L8FVN2	Uncharacterized protein.	C3H1-type domain-containing protein.	0.817
GMDG_00061	GMDG_02069	L8FLC8	L8FZ34	Uncharacterized protein.	RRM domain-containing protein.	0.741
GMDG_00061	GMDG_02371	L8FLC8	L8G1Y0	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.998
GMDG_00061	GMDG_02376	L8FLC8	L8G1Y6	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.962
GMDG_00061	GMDG_02441	L8FLC8	L8G319	Uncharacterized protein.	Uncharacterized protein.	0.999
GMDG_00061	GMDG_02609	L8FLC8	L8G4C7	Uncharacterized protein.	RanBD1 domain-containing protein.	0.881
GMDG_00061	GMDG_02671	L8FLC8	L8G4Q6	Uncharacterized protein.	Uncharacterized protein.	0.989
GMDG_00061	GMDG_03326	L8FLC8	L8G735	Uncharacterized protein.	Uncharacterized protein.	0.532
GMDG_00061	GMDG_03807	L8FLC8	L8G8P7	Uncharacterized protein.	Uncharacterized protein.	0.999
GMDG_00061	GMDG_03931	L8FLC8	L8G7Z9	Uncharacterized protein.	Uncharacterized protein.	0.854
GMDG_00061	GMDG_04600	L8FLC8	L8GAV9	Uncharacterized protein.	Nup188_C domain-containing protein.	0.995
GMDG_00061	GMDG_05718	L8FLC8	L8FQF2	Uncharacterized protein.	RRM domain-containing protein.	0.756
GMDG_00061	GMDG_06924	L8FLC8	L8FUV8	Uncharacterized protein.	NUP214 domain-containing protein.	0.988
GMDG_00061	GMDG_07790	L8FLC8	L8G009	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.988
GMDG_00061	GMDG_07884	L8FLC8	L8FZJ9	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.997
GMDG_00061	GMDG_08180	L8FLC8	L8G4N1	Uncharacterized protein.	Uncharacterized protein.	0.897
GMDG_00061	GMDG_08184	L8FLC8	L8G0Z2	Uncharacterized protein.	RanBD1 domain-containing protein.	0.897
GMDG_00061	GMDG_08510	L8FLC8	L8G344	Uncharacterized protein.	Nup54 domain-containing protein.	0.997
GMDG_01123	GMDG_00061	L8FT57	L8FLC8	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.994