9 items (Pseudogymnoascus destructans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GMDG_07138	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (98 aa)
	GMDG_02083	BZIP domain-containing protein. (212 aa)
	GMDG_03037	Uncharacterized protein. (513 aa)
	GMDG_03391	Polyubiquitin. (381 aa)
	GMDG_03916	BZIP domain-containing protein. (409 aa)
	GMDG_04833	Uncharacterized protein. (249 aa)
	GMDG_01346	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	GMDG_01881	Uncharacterized protein. (505 aa)
	GMDG_08009	APH domain-containing protein. (301 aa)

Your Current Organism:

Pseudogymnoascus destructans

NCBI taxonomy Id: 658429
Other names: Geomyces destructans 20631-21, P. destructans 20631-21, Pseudogymnoascus destructans 20631-21

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GMDG_01346	GMDG_01881	L8FSG6	L8FZ32	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.932
GMDG_01346	GMDG_03391	L8FSG6	L8G786	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin.	0.950
GMDG_01881	GMDG_01346	L8FZ32	L8FSG6	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.932
GMDG_01881	GMDG_02083	L8FZ32	L8G2Z5	Uncharacterized protein.	BZIP domain-containing protein.	0.932
GMDG_01881	GMDG_03037	L8FZ32	L8G4N0	Uncharacterized protein.	Uncharacterized protein.	0.601
GMDG_01881	GMDG_03391	L8FZ32	L8G786	Uncharacterized protein.	Polyubiquitin.	0.978
GMDG_01881	GMDG_03916	L8FZ32	L8G7Y4	Uncharacterized protein.	BZIP domain-containing protein.	0.932
GMDG_01881	GMDG_04833	L8FZ32	L8GCK2	Uncharacterized protein.	Uncharacterized protein.	0.601
GMDG_01881	GMDG_07138	L8FZ32	L8FZH3	Uncharacterized protein.	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.601
GMDG_01881	GMDG_08009	L8FZ32	L8FZQ1	Uncharacterized protein.	APH domain-containing protein.	0.601
GMDG_02083	GMDG_01881	L8G2Z5	L8FZ32	BZIP domain-containing protein.	Uncharacterized protein.	0.932
GMDG_02083	GMDG_03391	L8G2Z5	L8G786	BZIP domain-containing protein.	Polyubiquitin.	0.950
GMDG_03037	GMDG_01881	L8G4N0	L8FZ32	Uncharacterized protein.	Uncharacterized protein.	0.601
GMDG_03391	GMDG_01346	L8G786	L8FSG6	Polyubiquitin.	Ubiquitin-40S ribosomal protein S27a.	0.950
GMDG_03391	GMDG_01881	L8G786	L8FZ32	Polyubiquitin.	Uncharacterized protein.	0.978
GMDG_03391	GMDG_02083	L8G786	L8G2Z5	Polyubiquitin.	BZIP domain-containing protein.	0.950
GMDG_03391	GMDG_03916	L8G786	L8G7Y4	Polyubiquitin.	BZIP domain-containing protein.	0.950
GMDG_03916	GMDG_01881	L8G7Y4	L8FZ32	BZIP domain-containing protein.	Uncharacterized protein.	0.932
GMDG_03916	GMDG_03391	L8G7Y4	L8G786	BZIP domain-containing protein.	Polyubiquitin.	0.950
GMDG_04833	GMDG_01881	L8GCK2	L8FZ32	Uncharacterized protein.	Uncharacterized protein.	0.601