(44 nodes) Mixed, incl. Cysteine formation from homocysteine, and Tryptophan synthase beta chain-like, PALP domain network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_00672	Rhodanese domain-containing protein. (544 aa)
	FOXB_01164	Uncharacterized protein. (428 aa)
	FOXB_01190	Uncharacterized protein. (812 aa)
	FOXB_02011	AB hydrolase-1 domain-containing protein. (585 aa)
	FOXB_02090	Uncharacterized protein. (415 aa)
	FOXB_02549	Rhodanese domain-containing protein. (536 aa)
	FOXB_02816	Homoserine dehydrogenase. (896 aa)
	FOXB_03165	Uncharacterized protein. (300 aa)
	FOXB_03615	PALP domain-containing protein. (371 aa)
	FOXB_04473	PALP domain-containing protein. (319 aa)
	FOXB_04833	Meth_synt_2 domain-containing protein. (397 aa)
	FOXB_05688	Uncharacterized protein. (412 aa)
	FOXB_05823	Beta_elim_lyase domain-containing protein. (354 aa)
	FOXB_06328	PALP domain-containing protein. (356 aa)
	FOXB_06650	Uncharacterized protein. (356 aa)
	FOXB_06789	Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. (621 aa)
	FOXB_06869	Meth_synt_2 domain-containing protein. (405 aa)
	FOXB_07019	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (517 aa)
	FOXB_07244	Uncharacterized protein. (454 aa)
	FOXB_07550	PALP domain-containing protein. (318 aa)
	FOXB_08263	Uncharacterized protein. (446 aa)
	FOXB_08286	Uncharacterized protein. (776 aa)
	FOXB_08840	Uncharacterized protein. (555 aa)
	FOXB_09157	Uncharacterized protein. (389 aa)
	FOXB_09473	Uncharacterized protein. (586 aa)
	FOXB_09906	PALP domain-containing protein. (445 aa)
	FOXB_09938	AB hydrolase-1 domain-containing protein. (402 aa)
	FOXB_09942	Uncharacterized protein. (423 aa)
	FOXB_10017	Uncharacterized protein. (456 aa)
	FOXB_10072	PALP domain-containing protein. (401 aa)
	FOXB_10254	Uncharacterized protein. (191 aa)
	FOXB_10301	Uncharacterized protein. (422 aa)
	FOXB_10829	Uncharacterized protein. (604 aa)
	FOXB_12227	Uncharacterized protein. (766 aa)
	FOXB_12279	Uncharacterized protein. (867 aa)
	FOXB_12991	Threonine dehydratase. (586 aa)
	FOXB_13610	Uncharacterized protein. (575 aa)
	FOXB_13773	Adenosylhomocysteinase. (449 aa)
	FOXB_14032	Beta_elim_lyase domain-containing protein. (240 aa)
	FOXB_15581	PKS_ER domain-containing protein. (1294 aa)
	FOXB_16251	Hcy-binding domain-containing protein. (342 aa)
	FOXB_16421	Uncharacterized protein. (389 aa)
	FOXB_17337	PALP domain-containing protein. (307 aa)
	FOXB_17375	Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. (673 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_00672	FOXB_01164	F9F2P8	F9F439	Rhodanese domain-containing protein.	Uncharacterized protein.	0.765
FOXB_00672	FOXB_01190	F9F2P8	F9F465	Rhodanese domain-containing protein.	Uncharacterized protein.	0.656
FOXB_00672	FOXB_02090	F9F2P8	F9F6R5	Rhodanese domain-containing protein.	Uncharacterized protein.	0.765
FOXB_00672	FOXB_02816	F9F2P8	F9F8U1	Rhodanese domain-containing protein.	Homoserine dehydrogenase.	0.594
FOXB_00672	FOXB_03165	F9F2P8	F9F9U0	Rhodanese domain-containing protein.	Uncharacterized protein.	0.490
FOXB_00672	FOXB_04473	F9F2P8	F9FDJ5	Rhodanese domain-containing protein.	PALP domain-containing protein.	0.490
FOXB_00672	FOXB_04833	F9F2P8	F9FEK5	Rhodanese domain-containing protein.	Meth_synt_2 domain-containing protein.	0.630
FOXB_00672	FOXB_05823	F9F2P8	F9FHE4	Rhodanese domain-containing protein.	Beta_elim_lyase domain-containing protein.	0.451
FOXB_00672	FOXB_06328	F9F2P8	F9FIU9	Rhodanese domain-containing protein.	PALP domain-containing protein.	0.593
FOXB_00672	FOXB_06650	F9F2P8	F9FJN0	Rhodanese domain-containing protein.	Uncharacterized protein.	0.697
FOXB_00672	FOXB_06789	F9F2P8	F9FK60	Rhodanese domain-containing protein.	Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.	0.628
FOXB_00672	FOXB_06869	F9F2P8	F9FKE0	Rhodanese domain-containing protein.	Meth_synt_2 domain-containing protein.	0.674
FOXB_00672	FOXB_07019	F9F2P8	F9FKU0	Rhodanese domain-containing protein.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.593
FOXB_00672	FOXB_07244	F9F2P8	F9FLG4	Rhodanese domain-containing protein.	Uncharacterized protein.	0.765
FOXB_00672	FOXB_07550	F9F2P8	F9FMC0	Rhodanese domain-containing protein.	PALP domain-containing protein.	0.490
FOXB_00672	FOXB_08263	F9F2P8	F9FPD3	Rhodanese domain-containing protein.	Uncharacterized protein.	0.765
FOXB_00672	FOXB_08286	F9F2P8	F9FPF6	Rhodanese domain-containing protein.	Uncharacterized protein.	0.726
FOXB_00672	FOXB_08840	F9F2P8	F9FR10	Rhodanese domain-containing protein.	Uncharacterized protein.	0.765
FOXB_00672	FOXB_09157	F9F2P8	F9FRX6	Rhodanese domain-containing protein.	Uncharacterized protein.	0.765
FOXB_00672	FOXB_09473	F9F2P8	F9FSU2	Rhodanese domain-containing protein.	Uncharacterized protein.	0.765