(11 nodes) Glycine metabolic process, and Thymidylate synthase activity network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_01128	Uncharacterized protein. (384 aa)
	FOXB_02196	Thymidylat_synt domain-containing protein. (361 aa)
	FOXB_02400	Uncharacterized protein. (347 aa)
	FOXB_03676	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family. (186 aa)
	FOXB_05486	FSH1 domain-containing protein. (261 aa)
	FOXB_07776	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (484 aa)
	FOXB_08712	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family. (439 aa)
	FOXB_09167	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (518 aa)
	FOXB_13422	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. (1052 aa)
	FOXB_13423	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family. (172 aa)
	FOXB_13424	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (505 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_01128	FOXB_02196	F9F403	F9F721	Uncharacterized protein.	Thymidylat_synt domain-containing protein.	0.893
FOXB_01128	FOXB_02400	F9F403	F9F7M5	Uncharacterized protein.	Uncharacterized protein.	0.961
FOXB_01128	FOXB_03676	F9F403	F9FBC4	Uncharacterized protein.	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	0.820
FOXB_01128	FOXB_05486	F9F403	F9FGC8	Uncharacterized protein.	FSH1 domain-containing protein.	0.820
FOXB_01128	FOXB_07776	F9F403	F9FMZ6	Uncharacterized protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.958
FOXB_01128	FOXB_08712	F9F403	F9FQN2	Uncharacterized protein.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.978
FOXB_01128	FOXB_09167	F9F403	F9FRY6	Uncharacterized protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.958
FOXB_01128	FOXB_13422	F9F403	F9G440	Uncharacterized protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.960
FOXB_01128	FOXB_13423	F9F403	F9G441	Uncharacterized protein.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.905
FOXB_01128	FOXB_13424	F9F403	F9G442	Uncharacterized protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.958
FOXB_02196	FOXB_01128	F9F721	F9F403	Thymidylat_synt domain-containing protein.	Uncharacterized protein.	0.893
FOXB_02196	FOXB_02400	F9F721	F9F7M5	Thymidylat_synt domain-containing protein.	Uncharacterized protein.	0.916
FOXB_02196	FOXB_03676	F9F721	F9FBC4	Thymidylat_synt domain-containing protein.	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.	0.978
FOXB_02196	FOXB_05486	F9F721	F9FGC8	Thymidylat_synt domain-containing protein.	FSH1 domain-containing protein.	0.959
FOXB_02196	FOXB_07776	F9F721	F9FMZ6	Thymidylat_synt domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.855
FOXB_02196	FOXB_08712	F9F721	F9FQN2	Thymidylat_synt domain-containing protein.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.815
FOXB_02196	FOXB_09167	F9F721	F9FRY6	Thymidylat_synt domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.855
FOXB_02196	FOXB_13422	F9F721	F9G440	Thymidylat_synt domain-containing protein.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.851
FOXB_02196	FOXB_13423	F9F721	F9G441	Thymidylat_synt domain-containing protein.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.743
FOXB_02196	FOXB_13424	F9F721	F9G442	Thymidylat_synt domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.855