(33 nodes) Mixed, incl. Peptidase S8, subtilisin-related, and Dicarboxylic acid transport network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_00372	RING-type domain-containing protein. (590 aa)
	FOXB_00473	Uncharacterized protein; Belongs to the peptidase S8 family. (1577 aa)
	FOXB_00990	Uncharacterized protein. (395 aa)
	FOXB_03997	Uncharacterized protein. (497 aa)
	FOXB_05043	Uncharacterized protein; Belongs to the peptidase S8 family. (413 aa)
	FOXB_05432	Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family. (442 aa)
	FOXB_05561	Peptidase_S8 domain-containing protein. (893 aa)
	FOXB_05679	Uncharacterized protein. (663 aa)
	FOXB_06169	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (318 aa)
	FOXB_06284	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (748 aa)
	FOXB_06960	Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family. (731 aa)
	FOXB_07039	Uncharacterized protein. (473 aa)
	FOXB_07043	RING-type domain-containing protein. (290 aa)
	FOXB_07044	Uncharacterized protein. (153 aa)
	FOXB_07226	Uncharacterized protein. (1430 aa)
	FOXB_07491	Uncharacterized protein. (325 aa)
	FOXB_08144	Uncharacterized protein; Belongs to the peptidase S8 family. (397 aa)
	FOXB_08187	Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family. (389 aa)
	FOXB_08318	RING-type domain-containing protein. (276 aa)
	FOXB_08452	RING-type domain-containing protein. (517 aa)
	FOXB_09067	Zn(2)-C6 fungal-type domain-containing protein; Belongs to the peptidase S8 family. (992 aa)
	FOXB_09612	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (301 aa)
	FOXB_09647	Peptidase_S8 domain-containing protein. (441 aa)
	FOXB_11662	SGNH_hydro domain-containing protein. (316 aa)
	FOXB_12030	RING-type domain-containing protein. (449 aa)
	FOXB_12313	Uncharacterized protein; Belongs to the peptidase S8 family. (396 aa)
	FOXB_12642	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (332 aa)
	FOXB_13244	Uncharacterized protein; Belongs to the peptidase S8 family. (443 aa)
	FOXB_13791	Uncharacterized protein. (502 aa)
	FOXB_13793	Uncharacterized protein. (677 aa)
	FOXB_14244	Uncharacterized protein. (1075 aa)
	FOXB_14672	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (847 aa)
	FOXB_14868	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (299 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_00372	FOXB_00473	F9F1U8	F9F249	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the peptidase S8 family.	0.414
FOXB_00372	FOXB_00990	F9F1U8	F9F3L5	RING-type domain-containing protein.	Uncharacterized protein.	0.414
FOXB_00372	FOXB_03997	F9F1U8	F9FC69	RING-type domain-containing protein.	Uncharacterized protein.	0.414
FOXB_00372	FOXB_05043	F9F1U8	F9FF64	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the peptidase S8 family.	0.414
FOXB_00372	FOXB_05432	F9F1U8	F9FGE3	RING-type domain-containing protein.	Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family.	0.414
FOXB_00372	FOXB_05561	F9F1U8	F9FGN2	RING-type domain-containing protein.	Peptidase_S8 domain-containing protein.	0.414
FOXB_00372	FOXB_05679	F9F1U8	F9FH00	RING-type domain-containing protein.	Uncharacterized protein.	0.414
FOXB_00372	FOXB_06960	F9F1U8	F9FKN1	RING-type domain-containing protein.	Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family.	0.414
FOXB_00372	FOXB_07226	F9F1U8	F9FLE6	RING-type domain-containing protein.	Uncharacterized protein.	0.414
FOXB_00372	FOXB_08144	F9F1U8	F9FP14	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the peptidase S8 family.	0.414
FOXB_00372	FOXB_08187	F9F1U8	F9FP57	RING-type domain-containing protein.	Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family.	0.414
FOXB_00372	FOXB_09067	F9F1U8	F9FRN6	RING-type domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein; Belongs to the peptidase S8 family.	0.414
FOXB_00372	FOXB_09647	F9F1U8	F9FTB6	RING-type domain-containing protein.	Peptidase_S8 domain-containing protein.	0.414
FOXB_00372	FOXB_11662	F9F1U8	F9FZ25	RING-type domain-containing protein.	SGNH_hydro domain-containing protein.	0.414
FOXB_00372	FOXB_12313	F9F1U8	F9G0Y1	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the peptidase S8 family.	0.414
FOXB_00372	FOXB_13244	F9F1U8	F9G3L2	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the peptidase S8 family.	0.414
FOXB_00372	FOXB_13791	F9F1U8	F9G559	RING-type domain-containing protein.	Uncharacterized protein.	0.414
FOXB_00372	FOXB_13793	F9F1U8	F9G561	RING-type domain-containing protein.	Uncharacterized protein.	0.414
FOXB_00372	FOXB_14244	F9F1U8	F9G6G2	RING-type domain-containing protein.	Uncharacterized protein.	0.414
FOXB_00372	FOXB_14672	F9F1U8	F9G7P0	RING-type domain-containing protein.	P/Homo B domain-containing protein; Belongs to the peptidase S8 family.	0.759