(30 nodes) Mixed, incl. TRIAD supradomain, and Reticulon network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_00191	RBR-type E3 ubiquitin transferase. (707 aa)
	FOXB_03338	RBR-type E3 ubiquitin transferase. (658 aa)
	FOXB_03784	Uncharacterized protein. (737 aa)
	FOXB_04721	Uncharacterized protein. (250 aa)
	FOXB_05978	Uncharacterized protein. (96 aa)
	FOXB_06245	HET domain-containing protein. (904 aa)
	FOXB_06883	Uncharacterized protein. (170 aa)
	FOXB_07360	Reticulon domain-containing protein. (386 aa)
	FOXB_07593	Uncharacterized protein. (1029 aa)
	FOXB_07666	AMMECR1 domain-containing protein. (249 aa)
	FOXB_07878	Uncharacterized protein. (358 aa)
	FOXB_07992	NmrA domain-containing protein. (305 aa)
	FOXB_08022	RBR-type E3 ubiquitin transferase. (769 aa)
	FOXB_09064	Uncharacterized protein. (252 aa)
	FOXB_09443	RBR-type E3 ubiquitin transferase. (641 aa)
	FOXB_09870	Uncharacterized protein. (324 aa)
	FOXB_09951	Uncharacterized protein. (867 aa)
	FOXB_10081	OTU domain-containing protein. (305 aa)
	FOXB_10295	Uncharacterized protein. (423 aa)
	FOXB_11150	Uncharacterized protein. (658 aa)
	FOXB_11151	RBR-type E3 ubiquitin transferase. (399 aa)
	FOXB_11425	Uncharacterized protein. (416 aa)
	FOXB_12264	HET domain-containing protein. (838 aa)
	FOXB_12510	Reticulon domain-containing protein. (568 aa)
	FOXB_12700	RBR-type E3 ubiquitin transferase. (420 aa)
	FOXB_13029	Uncharacterized protein. (316 aa)
	FOXB_13179	Uncharacterized protein. (647 aa)
	FOXB_13889	Uncharacterized protein. (148 aa)
	FOXB_14503	RING-CH-type domain-containing protein. (521 aa)
	FOXB_17231	Uncharacterized protein. (403 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_00191	FOXB_03338	F9F1A5	F9FAB2	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.694
FOXB_00191	FOXB_11425	F9F1A5	F9FYE3	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.694
FOXB_03338	FOXB_00191	F9FAB2	F9F1A5	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.694
FOXB_03338	FOXB_03784	F9FAB2	F9FBK7	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.775
FOXB_03338	FOXB_06883	F9FAB2	F9FKF4	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.694
FOXB_03338	FOXB_07593	F9FAB2	F9FMG3	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.694
FOXB_03338	FOXB_08022	F9FAB2	F9FNP2	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.694
FOXB_03338	FOXB_09443	F9FAB2	F9FSR2	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.694
FOXB_03338	FOXB_09951	F9FAB2	F9FU70	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.694
FOXB_03338	FOXB_11150	F9FAB2	F9FXL8	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.694
FOXB_03338	FOXB_11151	F9FAB2	F9FXL9	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.694
FOXB_03338	FOXB_12700	F9FAB2	F9G218	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.694
FOXB_03338	FOXB_13179	F9FAB2	F9G3E7	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.694
FOXB_03338	FOXB_13889	F9FAB2	F9G5F7	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.694
FOXB_03338	FOXB_17231	F9FAB2	F9GEZ7	RBR-type E3 ubiquitin transferase.	Uncharacterized protein.	0.694
FOXB_03784	FOXB_03338	F9FBK7	F9FAB2	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.775
FOXB_03784	FOXB_11425	F9FBK7	F9FYE3	Uncharacterized protein.	Uncharacterized protein.	0.694
FOXB_06883	FOXB_03338	F9FKF4	F9FAB2	Uncharacterized protein.	RBR-type E3 ubiquitin transferase.	0.694
FOXB_06883	FOXB_07666	F9FKF4	F9FMN6	Uncharacterized protein.	AMMECR1 domain-containing protein.	0.416
FOXB_06883	FOXB_11425	F9FKF4	F9FYE3	Uncharacterized protein.	Uncharacterized protein.	0.694