8 items (Fusarium oxysporum Fo5176) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_03281	Uncharacterized protein. (272 aa)
	FOXB_04264	Uncharacterized protein. (199 aa)
	FOXB_07038	Uncharacterized protein. (281 aa)
	FOXB_08491	Uncharacterized protein. (262 aa)
	FOXB_08633	Uncharacterized protein. (1511 aa)
	FOXB_11680	Uncharacterized protein. (1211 aa)
	FOXB_11725	Uncharacterized protein. (1235 aa)
	FOXB_14024	Uncharacterized protein. (769 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_03281	FOXB_07038	F9FA56	F9FKV9	Uncharacterized protein.	Uncharacterized protein.	0.743
FOXB_03281	FOXB_08491	F9FA56	F9FQ11	Uncharacterized protein.	Uncharacterized protein.	0.860
FOXB_03281	FOXB_08633	F9FA56	F9FQF3	Uncharacterized protein.	Uncharacterized protein.	0.730
FOXB_03281	FOXB_11680	F9FA56	F9FZ43	Uncharacterized protein.	Uncharacterized protein.	0.931
FOXB_03281	FOXB_11725	F9FA56	F9FZ93	Uncharacterized protein.	Uncharacterized protein.	0.925
FOXB_03281	FOXB_14024	F9FA56	F9G5U2	Uncharacterized protein.	Uncharacterized protein.	0.786
FOXB_04264	FOXB_07038	F9FCY6	F9FKV9	Uncharacterized protein.	Uncharacterized protein.	0.743
FOXB_04264	FOXB_08491	F9FCY6	F9FQ11	Uncharacterized protein.	Uncharacterized protein.	0.765
FOXB_04264	FOXB_08633	F9FCY6	F9FQF3	Uncharacterized protein.	Uncharacterized protein.	0.761
FOXB_04264	FOXB_11680	F9FCY6	F9FZ43	Uncharacterized protein.	Uncharacterized protein.	0.931
FOXB_04264	FOXB_11725	F9FCY6	F9FZ93	Uncharacterized protein.	Uncharacterized protein.	0.886
FOXB_04264	FOXB_14024	F9FCY6	F9G5U2	Uncharacterized protein.	Uncharacterized protein.	0.813
FOXB_07038	FOXB_03281	F9FKV9	F9FA56	Uncharacterized protein.	Uncharacterized protein.	0.743
FOXB_07038	FOXB_04264	F9FKV9	F9FCY6	Uncharacterized protein.	Uncharacterized protein.	0.743
FOXB_07038	FOXB_08491	F9FKV9	F9FQ11	Uncharacterized protein.	Uncharacterized protein.	0.936
FOXB_07038	FOXB_08633	F9FKV9	F9FQF3	Uncharacterized protein.	Uncharacterized protein.	0.511
FOXB_07038	FOXB_11725	F9FKV9	F9FZ93	Uncharacterized protein.	Uncharacterized protein.	0.540
FOXB_07038	FOXB_14024	F9FKV9	F9G5U2	Uncharacterized protein.	Uncharacterized protein.	0.681
FOXB_08491	FOXB_03281	F9FQ11	F9FA56	Uncharacterized protein.	Uncharacterized protein.	0.860
FOXB_08491	FOXB_04264	F9FQ11	F9FCY6	Uncharacterized protein.	Uncharacterized protein.	0.765