(26 nodes) SCF ubiquitin ligase complex network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_13203	CULLIN_2 domain-containing protein; Belongs to the cullin family. (770 aa)
	FOXB_12912	Uncharacterized protein. (954 aa)
	FOXB_12439	Uncharacterized protein. (246 aa)
	FOXB_11958	Uncharacterized protein. (533 aa)
	FOXB_10959	Zf-rbx1 domain-containing protein. (117 aa)
	FOXB_10901	Uncharacterized protein. (728 aa)
	FOXB_10434	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (114 aa)
	FOXB_10366	F-box domain-containing protein. (742 aa)
	FOXB_10124	Uncharacterized protein. (992 aa)
	FOXB_09997	Uncharacterized protein. (424 aa)
	FOXB_08905	UBIQUITIN_CONJUGAT_2 domain-containing protein. (224 aa)
	FOXB_08370	Uncharacterized protein. (590 aa)
	FOXB_07608	F-box domain-containing protein. (691 aa)
	FOXB_07595	Uncharacterized protein. (1032 aa)
	FOXB_06727	F-box domain-containing protein. (526 aa)
	FOXB_06157	Uncharacterized protein. (421 aa)
	FOXB_05103	WD_REPEATS_REGION domain-containing protein. (1308 aa)
	FOXB_02954	Uncharacterized protein. (522 aa)
	FOXB_02693	Uncharacterized protein. (1165 aa)
	FOXB_01785	Uncharacterized protein. (566 aa)
	FOXB_00523	Uncharacterized protein. (726 aa)
	FOXB_14283	Uncharacterized protein. (695 aa)
	FOXB_14318	Uncharacterized protein. (521 aa)
	FOXB_14460	WD_REPEATS_REGION domain-containing protein. (1544 aa)
	FOXB_16489	Uncharacterized protein. (1460 aa)
	FOXB_16971	Uncharacterized protein. (509 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_00523	FOXB_07595	F9F299	F9FMG5	Uncharacterized protein.	Uncharacterized protein.	0.858
FOXB_00523	FOXB_08905	F9F299	F9FR75	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.820
FOXB_00523	FOXB_10124	F9F299	F9FUP3	Uncharacterized protein.	Uncharacterized protein.	0.653
FOXB_00523	FOXB_10366	F9F299	F9FVD5	Uncharacterized protein.	F-box domain-containing protein.	0.763
FOXB_00523	FOXB_10901	F9F299	F9FWW9	Uncharacterized protein.	Uncharacterized protein.	0.832
FOXB_00523	FOXB_10959	F9F299	F9FX27	Uncharacterized protein.	Zf-rbx1 domain-containing protein.	0.974
FOXB_00523	FOXB_13203	F9F299	F9G3H1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.950
FOXB_06727	FOXB_07608	F9FJZ8	F9FMH8	F-box domain-containing protein.	F-box domain-containing protein.	0.438
FOXB_06727	FOXB_08370	F9FJZ8	F9FPP0	F-box domain-containing protein.	Uncharacterized protein.	0.415
FOXB_06727	FOXB_10124	F9FJZ8	F9FUP3	F-box domain-containing protein.	Uncharacterized protein.	0.437
FOXB_06727	FOXB_10366	F9FJZ8	F9FVD5	F-box domain-containing protein.	F-box domain-containing protein.	0.437
FOXB_06727	FOXB_10959	F9FJZ8	F9FX27	F-box domain-containing protein.	Zf-rbx1 domain-containing protein.	0.782
FOXB_06727	FOXB_13203	F9FJZ8	F9G3H1	F-box domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.945
FOXB_07595	FOXB_00523	F9FMG5	F9F299	Uncharacterized protein.	Uncharacterized protein.	0.858
FOXB_07595	FOXB_07608	F9FMG5	F9FMH8	Uncharacterized protein.	F-box domain-containing protein.	0.451
FOXB_07595	FOXB_08905	F9FMG5	F9FR75	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.928
FOXB_07595	FOXB_10124	F9FMG5	F9FUP3	Uncharacterized protein.	Uncharacterized protein.	0.843
FOXB_07595	FOXB_10366	F9FMG5	F9FVD5	Uncharacterized protein.	F-box domain-containing protein.	0.878
FOXB_07595	FOXB_10901	F9FMG5	F9FWW9	Uncharacterized protein.	Uncharacterized protein.	0.833
FOXB_07595	FOXB_10959	F9FMG5	F9FX27	Uncharacterized protein.	Zf-rbx1 domain-containing protein.	0.991