(36 nodes) SCF ubiquitin ligase complex network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_11103	Sulfatase domain-containing protein. (556 aa)
	FOXB_10901	Uncharacterized protein. (728 aa)
	FOXB_10434	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (114 aa)
	FOXB_10366	F-box domain-containing protein. (742 aa)
	FOXB_10331	Uncharacterized protein. (1441 aa)
	FOXB_10330	Uncharacterized protein. (340 aa)
	FOXB_10156	F-box domain-containing protein. (607 aa)
	FOXB_10124	Uncharacterized protein. (992 aa)
	FOXB_01785	Uncharacterized protein. (566 aa)
	FOXB_08905	UBIQUITIN_CONJUGAT_2 domain-containing protein. (224 aa)
	FOXB_08681	Ubiquitin-like domain-containing protein. (80 aa)
	FOXB_08370	Uncharacterized protein. (590 aa)
	FOXB_00523	Uncharacterized protein. (726 aa)
	FOXB_00722	Zn(2)-C6 fungal-type domain-containing protein. (1600 aa)
	FOXB_09216	Uncharacterized protein. (659 aa)
	FOXB_01880	Uncharacterized protein. (343 aa)
	FOXB_01884	F-box domain-containing protein. (499 aa)
	FOXB_02574	Sulfatase domain-containing protein. (605 aa)
	FOXB_02954	Uncharacterized protein. (522 aa)
	FOXB_03734	Uncharacterized protein. (490 aa)
	FOXB_03947	Uncharacterized protein. (492 aa)
	FOXB_04555	Uncharacterized protein. (667 aa)
	FOXB_06727	F-box domain-containing protein. (526 aa)
	FOXB_07228	F-box domain-containing protein. (474 aa)
	FOXB_07608	F-box domain-containing protein. (691 aa)
	FOXB_16971	Uncharacterized protein. (509 aa)
	FOXB_16489	Uncharacterized protein. (1460 aa)
	FOXB_15879	Uncharacterized protein. (519 aa)
	FOXB_14766	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (150 aa)
	FOXB_14318	Uncharacterized protein. (521 aa)
	FOXB_14283	Uncharacterized protein. (695 aa)
	FOXB_13203	CULLIN_2 domain-containing protein; Belongs to the cullin family. (770 aa)
	FOXB_12912	Uncharacterized protein. (954 aa)
	FOXB_12439	Uncharacterized protein. (246 aa)
	FOXB_11958	Uncharacterized protein. (533 aa)
	FOXB_11515	Uncharacterized protein. (478 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_00523	FOXB_04555	F9F299	F9FDS7	Uncharacterized protein.	Uncharacterized protein.	0.468
FOXB_00523	FOXB_08681	F9F299	F9FQK1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.917
FOXB_00523	FOXB_08905	F9F299	F9FR75	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.820
FOXB_00523	FOXB_10124	F9F299	F9FUP3	Uncharacterized protein.	Uncharacterized protein.	0.653
FOXB_00523	FOXB_10366	F9F299	F9FVD5	Uncharacterized protein.	F-box domain-containing protein.	0.763
FOXB_00523	FOXB_10901	F9F299	F9FWW9	Uncharacterized protein.	Uncharacterized protein.	0.832
FOXB_00523	FOXB_13203	F9F299	F9G3H1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.950
FOXB_00523	FOXB_14766	F9F299	F9G7Y4	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.860
FOXB_01880	FOXB_01884	F9F655	F9F659	Uncharacterized protein.	F-box domain-containing protein.	0.567
FOXB_01884	FOXB_01880	F9F659	F9F655	F-box domain-containing protein.	Uncharacterized protein.	0.567
FOXB_01884	FOXB_07608	F9F659	F9FMH8	F-box domain-containing protein.	F-box domain-containing protein.	0.462
FOXB_01884	FOXB_13203	F9F659	F9G3H1	F-box domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.581
FOXB_04555	FOXB_00523	F9FDS7	F9F299	Uncharacterized protein.	Uncharacterized protein.	0.468
FOXB_04555	FOXB_08681	F9FDS7	F9FQK1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.720
FOXB_04555	FOXB_12912	F9FDS7	F9G2K3	Uncharacterized protein.	Uncharacterized protein.	0.468
FOXB_04555	FOXB_13203	F9FDS7	F9G3H1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.839
FOXB_06727	FOXB_07608	F9FJZ8	F9FMH8	F-box domain-containing protein.	F-box domain-containing protein.	0.438
FOXB_06727	FOXB_08370	F9FJZ8	F9FPP0	F-box domain-containing protein.	Uncharacterized protein.	0.415
FOXB_06727	FOXB_08681	F9FJZ8	F9FQK1	F-box domain-containing protein.	Ubiquitin-like domain-containing protein.	0.725
FOXB_06727	FOXB_10124	F9FJZ8	F9FUP3	F-box domain-containing protein.	Uncharacterized protein.	0.437