(15 nodes) Cys/Met metabolism, pyridoxal phosphate-dependent enzyme network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_09473	Uncharacterized protein. (586 aa)
	FOXB_10017	Uncharacterized protein. (456 aa)
	FOXB_10301	Uncharacterized protein. (422 aa)
	FOXB_10829	Uncharacterized protein. (604 aa)
	FOXB_09157	Uncharacterized protein. (389 aa)
	FOXB_08840	Uncharacterized protein. (555 aa)
	FOXB_08263	Uncharacterized protein. (446 aa)
	FOXB_07244	Uncharacterized protein. (454 aa)
	FOXB_02816	Homoserine dehydrogenase. (896 aa)
	FOXB_02090	Uncharacterized protein. (415 aa)
	FOXB_01164	Uncharacterized protein. (428 aa)
	FOXB_12279	Uncharacterized protein. (867 aa)
	FOXB_13610	Uncharacterized protein. (575 aa)
	FOXB_16421	Uncharacterized protein. (389 aa)
	FOXB_09942	Uncharacterized protein. (423 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_01164	FOXB_02816	F9F439	F9F8U1	Uncharacterized protein.	Homoserine dehydrogenase.	0.724
FOXB_01164	FOXB_07244	F9F439	F9FLG4	Uncharacterized protein.	Uncharacterized protein.	0.727
FOXB_01164	FOXB_08263	F9F439	F9FPD3	Uncharacterized protein.	Uncharacterized protein.	0.813
FOXB_01164	FOXB_08840	F9F439	F9FR10	Uncharacterized protein.	Uncharacterized protein.	0.681
FOXB_01164	FOXB_09473	F9F439	F9FSU2	Uncharacterized protein.	Uncharacterized protein.	0.723
FOXB_01164	FOXB_09942	F9F439	F9FU61	Uncharacterized protein.	Uncharacterized protein.	0.808
FOXB_01164	FOXB_10017	F9F439	F9FUD6	Uncharacterized protein.	Uncharacterized protein.	0.766
FOXB_01164	FOXB_10301	F9F439	F9FV70	Uncharacterized protein.	Uncharacterized protein.	0.787
FOXB_01164	FOXB_10829	F9F439	F9FWP7	Uncharacterized protein.	Uncharacterized protein.	0.706
FOXB_01164	FOXB_13610	F9F439	F9G4M8	Uncharacterized protein.	Uncharacterized protein.	0.688
FOXB_02090	FOXB_02816	F9F6R5	F9F8U1	Uncharacterized protein.	Homoserine dehydrogenase.	0.651
FOXB_02090	FOXB_07244	F9F6R5	F9FLG4	Uncharacterized protein.	Uncharacterized protein.	0.666
FOXB_02090	FOXB_08263	F9F6R5	F9FPD3	Uncharacterized protein.	Uncharacterized protein.	0.638
FOXB_02090	FOXB_08840	F9F6R5	F9FR10	Uncharacterized protein.	Uncharacterized protein.	0.596
FOXB_02090	FOXB_09473	F9F6R5	F9FSU2	Uncharacterized protein.	Uncharacterized protein.	0.655
FOXB_02090	FOXB_09942	F9F6R5	F9FU61	Uncharacterized protein.	Uncharacterized protein.	0.670
FOXB_02090	FOXB_10017	F9F6R5	F9FUD6	Uncharacterized protein.	Uncharacterized protein.	0.714
FOXB_02090	FOXB_10301	F9F6R5	F9FV70	Uncharacterized protein.	Uncharacterized protein.	0.620
FOXB_02090	FOXB_10829	F9F6R5	F9FWP7	Uncharacterized protein.	Uncharacterized protein.	0.563
FOXB_02090	FOXB_13610	F9F6R5	F9G4M8	Uncharacterized protein.	Uncharacterized protein.	0.610