(34 nodes) Zinc finger, RING-type, conserved site network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_08315	RING-type domain-containing protein. (363 aa)
	FOXB_03614	Uncharacterized protein. (986 aa)
	FOXB_02719	RING-type domain-containing protein. (120 aa)
	FOXB_02060	Uncharacterized protein. (1126 aa)
	FOXB_01937	Uncharacterized protein. (350 aa)
	FOXB_00805	RING-type domain-containing protein. (946 aa)
	FOXB_00100	Uncharacterized protein. (895 aa)
	FOXB_14223	RING-type domain-containing protein. (363 aa)
	FOXB_14091	RBR-type E3 ubiquitin transferase. (499 aa)
	FOXB_14023	RBR-type E3 ubiquitin transferase. (1004 aa)
	FOXB_13737	Uncharacterized protein. (680 aa)
	FOXB_12700	RBR-type E3 ubiquitin transferase. (420 aa)
	FOXB_12419	RING-type domain-containing protein. (521 aa)
	FOXB_11151	RBR-type E3 ubiquitin transferase. (399 aa)
	FOXB_11150	Uncharacterized protein. (658 aa)
	FOXB_10828	Uncharacterized protein. (538 aa)
	FOXB_10564	Uncharacterized protein. (457 aa)
	FOXB_10532	RING-type domain-containing protein. (518 aa)
	FOXB_10241	RING-type domain-containing protein. (533 aa)
	FOXB_10028	Uncharacterized protein. (329 aa)
	FOXB_09951	Uncharacterized protein. (867 aa)
	FOXB_09363	Uncharacterized protein. (529 aa)
	FOXB_09182	RING-type domain-containing protein. (644 aa)
	FOXB_08316	RING-type domain-containing protein. (240 aa)
	FOXB_14662	RING-type domain-containing protein. (363 aa)
	FOXB_08022	RBR-type E3 ubiquitin transferase. (769 aa)
	FOXB_07262	Uncharacterized protein. (1436 aa)
	FOXB_05333	E3 ubiquitin protein ligase. (702 aa)
	FOXB_05234	Uncharacterized protein. (1039 aa)
	FOXB_04556	Uncharacterized protein. (1073 aa)
	FOXB_04308	Uncharacterized protein. (443 aa)
	FOXB_16448	Uncharacterized protein. (430 aa)
	FOXB_17231	Uncharacterized protein. (403 aa)
	FOXB_17343	RBR-type E3 ubiquitin transferase. (684 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_00100	FOXB_04308	F9F126	F9FD30	Uncharacterized protein.	Uncharacterized protein.	0.806
FOXB_00100	FOXB_04556	F9F126	F9FDS8	Uncharacterized protein.	Uncharacterized protein.	0.415
FOXB_00100	FOXB_05333	F9F126	F9FG04	Uncharacterized protein.	E3 ubiquitin protein ligase.	0.404
FOXB_00100	FOXB_07262	F9F126	F9FLI2	Uncharacterized protein.	Uncharacterized protein.	0.441
FOXB_00100	FOXB_14662	F9F126	F9G7N0	Uncharacterized protein.	RING-type domain-containing protein.	0.518
FOXB_00805	FOXB_04308	F9F330	F9FD30	RING-type domain-containing protein.	Uncharacterized protein.	0.806
FOXB_00805	FOXB_04556	F9F330	F9FDS8	RING-type domain-containing protein.	Uncharacterized protein.	0.432
FOXB_00805	FOXB_05333	F9F330	F9FG04	RING-type domain-containing protein.	E3 ubiquitin protein ligase.	0.404
FOXB_00805	FOXB_07262	F9F330	F9FLI2	RING-type domain-containing protein.	Uncharacterized protein.	0.434
FOXB_00805	FOXB_14662	F9F330	F9G7N0	RING-type domain-containing protein.	RING-type domain-containing protein.	0.518
FOXB_01937	FOXB_02719	F9F6A1	F9F8J4	Uncharacterized protein.	RING-type domain-containing protein.	0.507
FOXB_01937	FOXB_14223	F9F6A1	F9G6E1	Uncharacterized protein.	RING-type domain-containing protein.	0.416
FOXB_02060	FOXB_04308	F9F6N5	F9FD30	Uncharacterized protein.	Uncharacterized protein.	0.732
FOXB_02060	FOXB_04556	F9F6N5	F9FDS8	Uncharacterized protein.	Uncharacterized protein.	0.441
FOXB_02060	FOXB_05333	F9F6N5	F9FG04	Uncharacterized protein.	E3 ubiquitin protein ligase.	0.404
FOXB_02719	FOXB_01937	F9F8J4	F9F6A1	RING-type domain-containing protein.	Uncharacterized protein.	0.507
FOXB_03614	FOXB_10532	F9FB62	F9FVV1	Uncharacterized protein.	RING-type domain-containing protein.	0.501
FOXB_04308	FOXB_00100	F9FD30	F9F126	Uncharacterized protein.	Uncharacterized protein.	0.806
FOXB_04308	FOXB_00805	F9FD30	F9F330	Uncharacterized protein.	RING-type domain-containing protein.	0.806
FOXB_04308	FOXB_02060	F9FD30	F9F6N5	Uncharacterized protein.	Uncharacterized protein.	0.732