(12 nodes) SUMOylation of transcription factors network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_11067	BRCT domain-containing protein. (1171 aa)
	FOXB_00236	BHLH domain-containing protein. (521 aa)
	FOXB_00252	Ubiquitin-like domain-containing protein. (98 aa)
	FOXB_01014	PINIT domain-containing protein. (440 aa)
	FOXB_04410	Uncharacterized protein. (231 aa)
	FOXB_04649	Uncharacterized protein. (524 aa)
	FOXB_07877	Uncharacterized protein. (242 aa)
	FOXB_09225	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
	FOXB_10643	Fork-head domain-containing protein. (772 aa)
	FOXB_10972	PINIT domain-containing protein. (189 aa)
	FOXB_13497	SP-RING-type domain-containing protein. (1152 aa)
	FOXB_16054	Uncharacterized protein. (617 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_00236	FOXB_00252	F9F1F0	F9F1G6	BHLH domain-containing protein.	Ubiquitin-like domain-containing protein.	0.695
FOXB_00236	FOXB_01014	F9F1F0	F9F3N9	BHLH domain-containing protein.	PINIT domain-containing protein.	0.587
FOXB_00236	FOXB_04410	F9F1F0	F9FDD2	BHLH domain-containing protein.	Uncharacterized protein.	0.587
FOXB_00236	FOXB_04649	F9F1F0	F9FE21	BHLH domain-containing protein.	Uncharacterized protein.	0.587
FOXB_00236	FOXB_07877	F9F1F0	F9FN97	BHLH domain-containing protein.	Uncharacterized protein.	0.587
FOXB_00236	FOXB_09225	F9F1F0	F9FS44	BHLH domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.720
FOXB_00236	FOXB_10972	F9F1F0	F9FX40	BHLH domain-containing protein.	PINIT domain-containing protein.	0.587
FOXB_00236	FOXB_13497	F9F1F0	F9G4B5	BHLH domain-containing protein.	SP-RING-type domain-containing protein.	0.587
FOXB_00252	FOXB_00236	F9F1G6	F9F1F0	Ubiquitin-like domain-containing protein.	BHLH domain-containing protein.	0.695
FOXB_00252	FOXB_01014	F9F1G6	F9F3N9	Ubiquitin-like domain-containing protein.	PINIT domain-containing protein.	0.932
FOXB_00252	FOXB_04410	F9F1G6	F9FDD2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.932
FOXB_00252	FOXB_04649	F9F1G6	F9FE21	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.932
FOXB_00252	FOXB_07877	F9F1G6	F9FN97	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.932
FOXB_00252	FOXB_09225	F9F1G6	F9FS44	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.999
FOXB_00252	FOXB_10643	F9F1G6	F9FW62	Ubiquitin-like domain-containing protein.	Fork-head domain-containing protein.	0.526
FOXB_00252	FOXB_10972	F9F1G6	F9FX40	Ubiquitin-like domain-containing protein.	PINIT domain-containing protein.	0.932
FOXB_00252	FOXB_11067	F9F1G6	F9FXD5	Ubiquitin-like domain-containing protein.	BRCT domain-containing protein.	0.882
FOXB_00252	FOXB_13497	F9F1G6	F9G4B5	Ubiquitin-like domain-containing protein.	SP-RING-type domain-containing protein.	0.932
FOXB_00252	FOXB_16054	F9F1G6	F9GBM1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.615
FOXB_01014	FOXB_00236	F9F3N9	F9F1F0	PINIT domain-containing protein.	BHLH domain-containing protein.	0.587