(56 nodes) Arginine biosynthesis network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_00489	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family. (478 aa)
	FOXB_17821	Uncharacterized protein. (266 aa)
	FOXB_16554	Aminotran_1_2 domain-containing protein. (401 aa)
	FOXB_15472	Aminotran_1_2 domain-containing protein. (1039 aa)
	FOXB_15179	M20_dimer domain-containing protein. (570 aa)
	FOXB_15160	Uncharacterized protein. (488 aa)
	FOXB_14838	Aminotran_1_2 domain-containing protein. (434 aa)
	FOXB_13907	Uncharacterized protein; Belongs to the arginase family. (311 aa)
	FOXB_13650	Uncharacterized protein. (2024 aa)
	FOXB_13334	Uncharacterized protein. (614 aa)
	FOXB_13328	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (352 aa)
	FOXB_12905	ASL_C2 domain-containing protein. (196 aa)
	FOXB_12839	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (451 aa)
	FOXB_12115	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family. (515 aa)
	FOXB_11996	M20_dimer domain-containing protein. (378 aa)
	FOXB_11937	Aspartate aminotransferase. (364 aa)
	FOXB_11769	N-acetyltransferase domain-containing protein. (523 aa)
	FOXB_10787	Uncharacterized protein. (565 aa)
	FOXB_10786	Uncharacterized protein. (448 aa)
	FOXB_10612	APH domain-containing protein. (312 aa)
	FOXB_10230	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (1007 aa)
	FOXB_10008	Uncharacterized protein. (836 aa)
	FOXB_09755	Aspartate aminotransferase. (550 aa)
	FOXB_09395	Uncharacterized protein; Belongs to the arginase family. (301 aa)
	FOXB_09358	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (446 aa)
	FOXB_08896	Urease domain-containing protein. (602 aa)
	FOXB_08803	Aspartate aminotransferase. (414 aa)
	FOXB_08773	Aminotran_1_2 domain-containing protein. (480 aa)
	FOXB_08681	Ubiquitin-like domain-containing protein. (80 aa)
	FOXB_08588	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family. (448 aa)
	FOXB_08351	M20_dimer domain-containing protein. (418 aa)
	FOXB_08334	M20_dimer domain-containing protein. (936 aa)
	FOXB_08274	Amino-acid acetyltransferase, mitochondrial; N-acetylglutamate synthase involved in arginine biosynthesis. Belongs to the acetyltransferase family. (660 aa)
	FOXB_08264	AAA domain-containing protein; Belongs to the AAA ATPase family. (394 aa)
	FOXB_08188	Uncharacterized protein. (290 aa)
	FOXB_07444	Uncharacterized protein. (867 aa)
	FOXB_07391	Uncharacterized protein. (113 aa)
	FOXB_06808	Uncharacterized protein. (432 aa)
	FOXB_06512	Uncharacterized protein. (1829 aa)
	FOXB_06108	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family. (862 aa)
	FOXB_05967	Aspartate aminotransferase. (424 aa)
	FOXB_05704	Semialdhyde_dh domain-containing protein. (386 aa)
	FOXB_05080	Uncharacterized protein. (182 aa)
	FOXB_05014	Lyase_1 domain-containing protein. (403 aa)
	FOXB_04962	F-box domain-containing protein. (599 aa)
	FOXB_04354	AAA domain-containing protein. (663 aa)
	FOXB_03959	Uncharacterized protein. (432 aa)
	FOXB_03955	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family. (452 aa)
	FOXB_03432	Arginase; Belongs to the arginase family. (325 aa)
	FOXB_02811	Uncharacterized protein. (616 aa)
	FOXB_02477	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family. (370 aa)
	FOXB_01236	Uncharacterized protein. (110 aa)
	FOXB_00901	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (1078 aa)
	FOXB_00443	Uncharacterized protein. (465 aa)
	FOXB_00384	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. (862 aa)
	FOXB_00080	Uncharacterized protein. (183 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_00080	FOXB_03432	F9F106	F9FAK6	Uncharacterized protein.	Arginase; Belongs to the arginase family.	0.546
FOXB_00080	FOXB_09395	F9F106	F9FSL4	Uncharacterized protein.	Uncharacterized protein; Belongs to the arginase family.	0.546
FOXB_00080	FOXB_13907	F9F106	F9G5H5	Uncharacterized protein.	Uncharacterized protein; Belongs to the arginase family.	0.546
FOXB_00384	FOXB_03432	F9F1W0	F9FAK6	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	Arginase; Belongs to the arginase family.	0.713
FOXB_00384	FOXB_05967	F9F1W0	F9FHT8	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	Aspartate aminotransferase.	0.534
FOXB_00384	FOXB_06512	F9F1W0	F9FJD3	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	Uncharacterized protein.	0.785
FOXB_00384	FOXB_08896	F9F1W0	F9FR66	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	Urease domain-containing protein.	0.740
FOXB_00384	FOXB_09395	F9F1W0	F9FSL4	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	Uncharacterized protein; Belongs to the arginase family.	0.713
FOXB_00384	FOXB_10008	F9F1W0	F9FUC7	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	Uncharacterized protein.	0.674
FOXB_00384	FOXB_13650	F9F1W0	F9G4R8	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	Uncharacterized protein.	0.785
FOXB_00384	FOXB_13907	F9F1W0	F9G5H5	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	Uncharacterized protein; Belongs to the arginase family.	0.713
FOXB_00443	FOXB_00901	F9F219	F9F3C6	Uncharacterized protein.	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.577
FOXB_00443	FOXB_03432	F9F219	F9FAK6	Uncharacterized protein.	Arginase; Belongs to the arginase family.	0.779
FOXB_00443	FOXB_03955	F9F219	F9FC27	Uncharacterized protein.	Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family.	0.914
FOXB_00443	FOXB_03959	F9F219	F9FC31	Uncharacterized protein.	Uncharacterized protein.	0.938
FOXB_00443	FOXB_05704	F9F219	F9FH25	Uncharacterized protein.	Semialdhyde_dh domain-containing protein.	0.985
FOXB_00443	FOXB_05967	F9F219	F9FHT8	Uncharacterized protein.	Aspartate aminotransferase.	0.473
FOXB_00443	FOXB_06512	F9F219	F9FJD3	Uncharacterized protein.	Uncharacterized protein.	0.568
FOXB_00443	FOXB_06808	F9F219	F9FK79	Uncharacterized protein.	Uncharacterized protein.	0.738
FOXB_00443	FOXB_07391	F9F219	F9FLW1	Uncharacterized protein.	Uncharacterized protein.	0.878