(56 nodes) Phenylalanine, tyrosine and tryptophan biosynthesis network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXB_06221	Zn(2)-C6 fungal-type domain-containing protein. (601 aa)
	FOXB_00216	Aminotran_1_2 domain-containing protein. (550 aa)
	FOXB_00602	Amino_oxidase domain-containing protein. (682 aa)
	FOXB_00881	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family. (422 aa)
	FOXB_01074	Aminotran_1_2 domain-containing protein. (371 aa)
	FOXB_01076	Fungal_trans domain-containing protein. (603 aa)
	FOXB_01636	Aminotran_1_2 domain-containing protein. (327 aa)
	FOXB_02327	Uncharacterized protein. (436 aa)
	FOXB_02496	Tryptophan synthase. (1379 aa)
	FOXB_02651	3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family. (1569 aa)
	FOXB_03274	Chorismate synthase. (393 aa)
	FOXB_03811	Zn(2)-C6 fungal-type domain-containing protein. (782 aa)
	FOXB_04151	Uncharacterized protein. (303 aa)
	FOXB_04152	Uncharacterized protein. (326 aa)
	FOXB_04310	Aminotran_1_2 domain-containing protein. (446 aa)
	FOXB_05271	Aminotran_1_2 domain-containing protein. (532 aa)
	FOXB_05570	Uncharacterized protein. (704 aa)
	FOXB_05682	Amino_oxidase domain-containing protein. (607 aa)
	FOXB_05880	Aminotran_1_2 domain-containing protein. (516 aa)
	FOXB_05967	Aspartate aminotransferase. (424 aa)
	FOXB_05970	Tryptophan synthase. (717 aa)
	FOXB_06092	Fungal_trans domain-containing protein. (955 aa)
	FOXB_06093	Uncharacterized protein. (745 aa)
	FOXB_07040	Uncharacterized protein. (576 aa)
	FOXB_07394	Aminotran_1_2 domain-containing protein. (437 aa)
	FOXB_07848	Amino_oxidase domain-containing protein. (616 aa)
	FOXB_08291	Fido domain-containing protein. (1109 aa)
	FOXB_08295	Uncharacterized protein. (491 aa)
	qutE	Catabolic 3-dehydroquinase; Is involved in the catabolism of quinate. Allows the utilization of quinate as carbon source via the beta-ketoadipate pathway; Belongs to the type-II 3-dehydroquinase family. (150 aa)
	FOXB_08533	Uncharacterized protein. (411 aa)
	FOXB_08563	Amino_oxidase domain-containing protein. (525 aa)
	FOXB_08803	Aspartate aminotransferase. (414 aa)
	FOXB_08862	Phospho-2-dehydro-3-deoxyheptonate aldolase. (372 aa)
	FOXB_09115	Uncharacterized protein. (331 aa)
	FOXB_09270	Uncharacterized protein. (138 aa)
	FOXB_09738	Uncharacterized protein. (189 aa)
	FOXB_09755	Aspartate aminotransferase. (550 aa)
	FOXB_11576	Phospho-2-dehydro-3-deoxyheptonate aldolase; Belongs to the class-II DAHP synthase family. (435 aa)
	FOXB_11648	Aminotran_1_2 domain-containing protein. (504 aa)
	FOXB_11838	Uncharacterized protein. (622 aa)
	FOXB_11899	DHQ_synthase domain-containing protein. (493 aa)
	FOXB_11937	Aspartate aminotransferase. (364 aa)
	FOXB_13313	Uncharacterized protein. (1226 aa)
	FOXB_14085	Amino_oxidase domain-containing protein. (624 aa)
	FOXB_14428	Phospho-2-dehydro-3-deoxyheptonate aldolase. (364 aa)
	FOXB_14633	Chorismate mutase. (260 aa)
	FOXB_14838	Aminotran_1_2 domain-containing protein. (434 aa)
	FOXB_14948	Amino_oxidase domain-containing protein. (764 aa)
	FOXB_15258	Uncharacterized protein. (275 aa)
	FOXB_15289	Amino_oxidase domain-containing protein. (580 aa)
	FOXB_15315	Phospho-2-dehydro-3-deoxyheptonate aldolase; Belongs to the class-II DAHP synthase family. (471 aa)
	FOXB_15472	Aminotran_1_2 domain-containing protein. (1039 aa)
	FOXB_16220	Zn(2)-C6 fungal-type domain-containing protein. (239 aa)
	FOXB_16256	FtsJ domain-containing protein. (389 aa)
	FOXB_16441	Uncharacterized protein. (36 aa)
	FOXB_16554	Aminotran_1_2 domain-containing protein. (401 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_00216	FOXB_00881	F9F1D0	F9F3A6	Aminotran_1_2 domain-containing protein.	Prephenate dehydrogenase [NADP(+)]; Belongs to the prephenate/arogenate dehydrogenase family.	0.739
FOXB_00216	FOXB_02496	F9F1D0	F9F7X1	Aminotran_1_2 domain-containing protein.	Tryptophan synthase.	0.889
FOXB_00216	FOXB_02651	F9F1D0	F9F8C6	Aminotran_1_2 domain-containing protein.	3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.	0.423
FOXB_00216	FOXB_03274	F9F1D0	F9FA49	Aminotran_1_2 domain-containing protein.	Chorismate synthase.	0.744
FOXB_00216	FOXB_05271	F9F1D0	F9FFU2	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.651
FOXB_00216	FOXB_05880	F9F1D0	F9FHK1	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.656
FOXB_00216	FOXB_05967	F9F1D0	F9FHT8	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.766
FOXB_00216	FOXB_05970	F9F1D0	F9FHU1	Aminotran_1_2 domain-containing protein.	Tryptophan synthase.	0.893
FOXB_00216	FOXB_07040	F9F1D0	F9FKW1	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.735
FOXB_00216	FOXB_07394	F9F1D0	F9FLW4	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.730
FOXB_00216	FOXB_08803	F9F1D0	F9FQX3	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.737
FOXB_00216	FOXB_09115	F9F1D0	F9FRT4	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.750
FOXB_00216	FOXB_09755	F9F1D0	F9FTM4	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.734
FOXB_00216	FOXB_11899	F9F1D0	F9FZR7	Aminotran_1_2 domain-containing protein.	DHQ_synthase domain-containing protein.	0.423
FOXB_00216	FOXB_11937	F9F1D0	F9FZV5	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.598
FOXB_00216	FOXB_13313	F9F1D0	F9G3T1	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.894
FOXB_00216	FOXB_14633	F9F1D0	F9G7K1	Aminotran_1_2 domain-containing protein.	Chorismate mutase.	0.726
FOXB_00216	FOXB_14838	F9F1D0	F9G856	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.736
FOXB_00216	FOXB_15472	F9F1D0	F9G9Z0	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.436
FOXB_00216	FOXB_16554	F9F1D0	F9GD20	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.632