(26 nodes) Selenocompound metabolism network (Fusarium oxysporum Fo5176)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MET3	Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family. (574 aa)
	FOXB_10301	Uncharacterized protein. (422 aa)
	FOXB_10829	Uncharacterized protein. (604 aa)
	FOXB_11084	tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (677 aa)
	FOXB_12046	Thioredoxin reductase. (330 aa)
	FOXB_12047	Vps53_N domain-containing protein. (820 aa)
	FOXB_12227	Uncharacterized protein. (766 aa)
	FOXB_12279	Uncharacterized protein. (867 aa)
	FOXB_11406	Pyr_redox_2 domain-containing protein. (388 aa)
	FOXB_13610	Uncharacterized protein. (575 aa)
	FOXB_16421	Uncharacterized protein. (389 aa)
	FOXB_00496	C3H1-type domain-containing protein. (1970 aa)
	FOXB_01164	Uncharacterized protein. (428 aa)
	FOXB_01816	Uncharacterized protein. (2272 aa)
	FOXB_02090	Uncharacterized protein. (415 aa)
	FOXB_02752	Uncharacterized protein. (1250 aa)
	FOXB_04549	tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (580 aa)
	FOXB_04833	Meth_synt_2 domain-containing protein. (397 aa)
	FOXB_06869	Meth_synt_2 domain-containing protein. (405 aa)
	FOXB_07107	Pyr_redox_2 domain-containing protein. (398 aa)
	FOXB_07544	Aminotran_5 domain-containing protein. (408 aa)
	FOXB_08263	Uncharacterized protein. (446 aa)
	FOXB_08840	Uncharacterized protein. (555 aa)
	FOXB_09157	Uncharacterized protein. (389 aa)
	FOXB_09473	Uncharacterized protein. (586 aa)
	FOXB_10017	Uncharacterized protein. (456 aa)

Your Current Organism:

Fusarium oxysporum Fo5176

NCBI taxonomy Id: 660025
Other names: F. oxysporum Fo5176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXB_01164	FOXB_04549	F9F439	F9FDS1	Uncharacterized protein.	tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.540
FOXB_01164	FOXB_04833	F9F439	F9FEK5	Uncharacterized protein.	Meth_synt_2 domain-containing protein.	0.770
FOXB_01164	FOXB_06869	F9F439	F9FKE0	Uncharacterized protein.	Meth_synt_2 domain-containing protein.	0.789
FOXB_01164	FOXB_07107	F9F439	F9FL28	Uncharacterized protein.	Pyr_redox_2 domain-containing protein.	0.422
FOXB_01164	FOXB_08263	F9F439	F9FPD3	Uncharacterized protein.	Uncharacterized protein.	0.813
FOXB_01164	FOXB_08840	F9F439	F9FR10	Uncharacterized protein.	Uncharacterized protein.	0.681
FOXB_01164	FOXB_09473	F9F439	F9FSU2	Uncharacterized protein.	Uncharacterized protein.	0.723
FOXB_01164	FOXB_10017	F9F439	F9FUD6	Uncharacterized protein.	Uncharacterized protein.	0.766
FOXB_01164	FOXB_10301	F9F439	F9FV70	Uncharacterized protein.	Uncharacterized protein.	0.787
FOXB_01164	FOXB_10829	F9F439	F9FWP7	Uncharacterized protein.	Uncharacterized protein.	0.706
FOXB_01164	FOXB_11084	F9F439	F9FXF2	Uncharacterized protein.	tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.540
FOXB_01164	FOXB_11406	F9F439	F9FYC4	Uncharacterized protein.	Pyr_redox_2 domain-containing protein.	0.422
FOXB_01164	FOXB_12046	F9F439	F9G064	Uncharacterized protein.	Thioredoxin reductase.	0.586
FOXB_01164	FOXB_12047	F9F439	F9G065	Uncharacterized protein.	Vps53_N domain-containing protein.	0.522
FOXB_01164	FOXB_12227	F9F439	F9G0P5	Uncharacterized protein.	Uncharacterized protein.	0.882
FOXB_01164	FOXB_13610	F9F439	F9G4M8	Uncharacterized protein.	Uncharacterized protein.	0.688
FOXB_02090	FOXB_04549	F9F6R5	F9FDS1	Uncharacterized protein.	tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.540
FOXB_02090	FOXB_04833	F9F6R5	F9FEK5	Uncharacterized protein.	Meth_synt_2 domain-containing protein.	0.770
FOXB_02090	FOXB_06869	F9F6R5	F9FKE0	Uncharacterized protein.	Meth_synt_2 domain-containing protein.	0.789
FOXB_02090	FOXB_07107	F9F6R5	F9FL28	Uncharacterized protein.	Pyr_redox_2 domain-containing protein.	0.422