(41 nodes) Organelle fusion network (Nectria haematococca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C7YRE0_NECH7	t-SNARE coiled-coil homology domain-containing protein. (294 aa)
	C7YRG2_NECH7	Predicted protein. (130 aa)
	C7YRY5_NECH7	Predicted protein. (994 aa)
	C7YSD9_NECH7	Predicted protein. (471 aa)
	C7YTG1_NECH7	Predicted protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (918 aa)
	C7YU93_NECH7	t-SNARE coiled-coil homology domain-containing protein. (239 aa)
	C7YUC9_NECH7	Predicted protein. (489 aa)
	C7YUS2_NECH7	Predicted protein; Belongs to the synaptobrevin family. (215 aa)
	C7YW09_NECH7	E3 ubiquitin-protein ligase PEP5. (940 aa)
	C7YWJ4_NECH7	t-SNARE coiled-coil homology domain-containing protein. (176 aa)
	C7YWJ7_NECH7	Predicted protein. (745 aa)
	C7ZPL6_NECH7	Predicted protein. (71 aa)
	C7ZP19_NECH7	Uncharacterized protein. (619 aa)
	C7ZNW8_NECH7	Predicted protein. (188 aa)
	C7ZJB1_NECH7	Uncharacterized protein. (319 aa)
	C7ZH96_NECH7	Uncharacterized protein. (135 aa)
	C7Z9Q4_NECH7	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology. (793 aa)
	C7Z9H1_NECH7	Predicted protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (911 aa)
	C7Z930_NECH7	Predicted protein. (668 aa)
	C7Z8R1_NECH7	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex. (242 aa)
	C7Z550_NECH7	Predicted protein; Belongs to the heat shock protein 70 family. (656 aa)
	C7Z4Z7_NECH7	Predicted protein. (296 aa)
	C7Z245_NECH7	Uncharacterized protein. (266 aa)
	C7Z1L7_NECH7	Predicted protein. (1194 aa)
	C7Z1K3_NECH7	Predicted protein; Belongs to the syntaxin family. (345 aa)
	C7Z1C1_NECH7	Predicted protein. (263 aa)
	C7Z1B2_NECH7	Uncharacterized protein. (96 aa)
	C7Z0V4_NECH7	Predicted protein. (253 aa)
	C7Z0R0_NECH7	Predicted protein. (821 aa)
	C7YZC8_NECH7	CNH domain-containing protein. (1074 aa)
	C7YYX3_NECH7	Predicted protein. (963 aa)
	C7YHA0_NECH7	Predicted protein. (771 aa)
	C7YI40_NECH7	t-SNARE coiled-coil homology domain-containing protein. (416 aa)
	C7YIB2_NECH7	Predicted protein. (1846 aa)
	C7YIH7_NECH7	Predicted protein. (220 aa)
	C7YJX7_NECH7	t-SNARE coiled-coil homology domain-containing protein. (435 aa)
	C7YMK7_NECH7	V-SNARE coiled-coil homology domain-containing protein. (109 aa)
	C7YNG5_NECH7	Predicted protein. (314 aa)
	C7YP00_NECH7	Uncharacterized protein. (361 aa)
	C7YPY0_NECH7	Predicted protein. (1366 aa)
	C7YQH0_NECH7	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (665 aa)

Your Current Organism:

Nectria haematococca

NCBI taxonomy Id: 660122
Other names: Nectria haematococca mpVI 77-13-4, [. haematococca mpVI 77-13-4, [Nectria] haematococca mpVI 77-13-4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C7YHA0_NECH7	C7YRG2_NECH7	C7YHA0	C7YRG2	Predicted protein.	Predicted protein.	0.537
C7YHA0_NECH7	C7YWJ7_NECH7	C7YHA0	C7YWJ7	Predicted protein.	Predicted protein.	0.704
C7YI40_NECH7	C7YJX7_NECH7	C7YI40	C7YJX7	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.957
C7YI40_NECH7	C7YMK7_NECH7	C7YI40	C7YMK7	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.996
C7YI40_NECH7	C7YNG5_NECH7	C7YI40	C7YNG5	t-SNARE coiled-coil homology domain-containing protein.	Predicted protein.	0.833
C7YI40_NECH7	C7YRE0_NECH7	C7YI40	C7YRE0	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.906
C7YI40_NECH7	C7YU93_NECH7	C7YI40	C7YU93	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.655
C7YI40_NECH7	C7YUS2_NECH7	C7YI40	C7YUS2	t-SNARE coiled-coil homology domain-containing protein.	Predicted protein; Belongs to the synaptobrevin family.	0.896
C7YI40_NECH7	C7YWJ4_NECH7	C7YI40	C7YWJ4	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.522
C7YI40_NECH7	C7Z0R0_NECH7	C7YI40	C7Z0R0	t-SNARE coiled-coil homology domain-containing protein.	Predicted protein.	0.912
C7YI40_NECH7	C7Z0V4_NECH7	C7YI40	C7Z0V4	t-SNARE coiled-coil homology domain-containing protein.	Predicted protein.	0.669
C7YI40_NECH7	C7Z1C1_NECH7	C7YI40	C7Z1C1	t-SNARE coiled-coil homology domain-containing protein.	Predicted protein.	0.709
C7YI40_NECH7	C7Z1K3_NECH7	C7YI40	C7Z1K3	t-SNARE coiled-coil homology domain-containing protein.	Predicted protein; Belongs to the syntaxin family.	0.703
C7YI40_NECH7	C7Z8R1_NECH7	C7YI40	C7Z8R1	t-SNARE coiled-coil homology domain-containing protein.	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex.	0.705
C7YIB2_NECH7	C7YIH7_NECH7	C7YIB2	C7YIH7	Predicted protein.	Predicted protein.	0.643
C7YIB2_NECH7	C7YPY0_NECH7	C7YIB2	C7YPY0	Predicted protein.	Predicted protein.	0.708
C7YIB2_NECH7	C7YQH0_NECH7	C7YIB2	C7YQH0	Predicted protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.989
C7YIB2_NECH7	C7YU93_NECH7	C7YIB2	C7YU93	Predicted protein.	t-SNARE coiled-coil homology domain-containing protein.	0.415
C7YIB2_NECH7	C7YW09_NECH7	C7YIB2	C7YW09	Predicted protein.	E3 ubiquitin-protein ligase PEP5.	0.994
C7YIB2_NECH7	C7YYX3_NECH7	C7YIB2	C7YYX3	Predicted protein.	Predicted protein.	0.994