(57 nodes) Twin-arginine translocation pathway, signal sequence network (Halorientalis regularis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDE73407.1	Amino acid/amide ABC transporter substrate-binding protein, HAAT family. (458 aa)
	SDE73788.1	Molybdate/tungstate transport system substrate-binding protein. (279 aa)
	SDE76705.1	Hypothetical protein. (460 aa)
	SDE77181.1	Tungstate/molybdate binding protein. (349 aa)
	SDE81914.1	Hypothetical protein. (366 aa)
	SDE71522.1	Halocyanin domain-containing protein. (228 aa)
	SDE89524.1	Hypothetical protein. (302 aa)
	SDE93188.1	Hypothetical protein. (221 aa)
	SDE87162.1	Spermidine/putrescine transport system substrate-binding protein. (360 aa)
	SDE94804.1	Hypothetical protein. (316 aa)
	SDE94834.1	Hypothetical protein. (331 aa)
	SDF02833.1	Hypothetical protein. (144 aa)
	SDF06701.1	Peptide/nickel transport system substrate-binding protein. (595 aa)
	SDF01021.1	Endonuclease/Exonuclease/phosphatase family protein. (373 aa)
	SDF17924.1	Hypothetical protein. (220 aa)
	SDF18189.1	Plastocyanin. (827 aa)
	SDF32332.1	Hypothetical protein. (196 aa)
	SDF35396.1	Nucleoside-binding protein. (359 aa)
	SDF28355.1	Hypothetical protein. (373 aa)
	SDF28390.1	Hypothetical protein. (269 aa)
	SDF28468.1	SipW-cognate class signal peptide. (291 aa)
	SDF44052.1	Protein of unknown function. (346 aa)
	SDF40573.1	Tat (twin-arginine translocation) pathway signal sequence. (623 aa)
	SDF40077.1	Deferrochelatase/peroxidase EfeB. (435 aa)
	SDF55903.1	Hypothetical protein. (470 aa)
	SDF57745.1	Phosphate ABC transporter substrate-binding protein, PhoT family. (354 aa)
	SDF58717.1	Hypothetical protein. (193 aa)
	SDF60184.1	Hypothetical protein. (335 aa)
	SDF54767.1	Zinc transport system substrate-binding protein. (347 aa)
	SDF55098.1	Amino acid/amide ABC transporter substrate-binding protein, HAAT family. (424 aa)
	SDF67899.1	Hypothetical protein. (423 aa)
	SDF70938.1	Amino acid/amide ABC transporter substrate-binding protein, HAAT family. (407 aa)
	SDF77616.1	Protein of unknown function. (268 aa)
	SDF75239.1	Alpha/beta hydrolase of unknown function. (295 aa)
	SDF75747.1	Hypothetical protein. (199 aa)
	SDF85541.1	Halocyanin domain-containing protein. (242 aa)
	SDF89706.1	Endonuclease/Exonuclease/phosphatase family protein. (428 aa)
	SDF90285.1	Putative hydrolase, CocE/NonD family. (504 aa)
	SDF91696.1	Alpha/beta hydrolase of unknown function. (314 aa)
	SDF94347.1	Halocyanin domain-containing protein. (216 aa)
	SDG01112.1	Hypothetical protein. (469 aa)
	SDG01751.1	Hypothetical protein. (284 aa)
	SDG01781.1	Hypothetical protein. (470 aa)
	SDG07056.1	Protein of unknown function. (354 aa)
	SDG04830.1	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein. (373 aa)
	SDG05335.1	Respiratory nitrate reductase alpha subunit apoprotein. (965 aa)
	SDG06340.1	ABC-type Fe3+-hydroxamate transport system, substrate-binding protein. (392 aa)
	SDG06725.1	40-residue YVTN family beta-propeller repeat-containing protein. (428 aa)
	SDG14490.1	Hypothetical protein. (195 aa)
	SDG14592.1	Hypothetical protein. (427 aa)
	SDG14939.1	Peptide/nickel transport system substrate-binding protein. (508 aa)
	SDG15287.1	Zinc transport system substrate-binding protein. (505 aa)
	SDG23291.1	Protein-disulfide isomerase. (217 aa)
	SDG31023.1	Hypothetical protein. (142 aa)
	SDG43282.1	Alpha/beta hydrolase of unknown function. (316 aa)
	SDG44221.1	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat. (287 aa)
	SDG45944.1	Hypothetical protein. (174 aa)

Your Current Organism:

Halorientalis regularis

NCBI taxonomy Id: 660518
Other names: CGMCC 1.10123, H. regularis, Halobacteriaceae archaeon TBN19, Halobacteriaceae archaeon TNN28, Halorientalis regularis Cui et al. 2011, JCM 16425, strain TNN28

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDE71522.1	SDG04830.1	SAMN05216218_10148	SAMN05216218_11414	Halocyanin domain-containing protein.	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	0.710
SDE71522.1	SDG06340.1	SAMN05216218_10148	SAMN05216218_11473	Halocyanin domain-containing protein.	ABC-type Fe3+-hydroxamate transport system, substrate-binding protein.	0.463
SDE71522.1	SDG06725.1	SAMN05216218_10148	SAMN05216218_11488	Halocyanin domain-containing protein.	40-residue YVTN family beta-propeller repeat-containing protein.	0.646
SDE73407.1	SDF70938.1	SAMN05216218_101121	SAMN05216218_108243	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	0.430
SDE87162.1	SDF18189.1	SAMN05216218_10229	SAMN05216218_104151	Spermidine/putrescine transport system substrate-binding protein.	Plastocyanin.	0.420
SDE94804.1	SDE94834.1	SAMN05216218_102308	SAMN05216218_102309	Hypothetical protein.	Hypothetical protein.	0.490
SDE94834.1	SDE94804.1	SAMN05216218_102309	SAMN05216218_102308	Hypothetical protein.	Hypothetical protein.	0.490
SDF06701.1	SDG14939.1	SAMN05216218_103248	SAMN05216218_11655	Peptide/nickel transport system substrate-binding protein.	Peptide/nickel transport system substrate-binding protein.	0.823
SDF18189.1	SDE87162.1	SAMN05216218_104151	SAMN05216218_10229	Plastocyanin.	Spermidine/putrescine transport system substrate-binding protein.	0.420
SDF18189.1	SDF94347.1	SAMN05216218_104151	SAMN05216218_11217	Plastocyanin.	Halocyanin domain-containing protein.	0.518
SDF18189.1	SDG04830.1	SAMN05216218_104151	SAMN05216218_11414	Plastocyanin.	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	0.697
SDF18189.1	SDG06725.1	SAMN05216218_104151	SAMN05216218_11488	Plastocyanin.	40-residue YVTN family beta-propeller repeat-containing protein.	0.646
SDF28355.1	SDF28390.1	SAMN05216218_10560	SAMN05216218_10561	Hypothetical protein.	Hypothetical protein.	0.807
SDF28355.1	SDF28468.1	SAMN05216218_10560	SAMN05216218_10563	Hypothetical protein.	SipW-cognate class signal peptide.	0.432
SDF28390.1	SDF28355.1	SAMN05216218_10561	SAMN05216218_10560	Hypothetical protein.	Hypothetical protein.	0.807
SDF28390.1	SDF28468.1	SAMN05216218_10561	SAMN05216218_10563	Hypothetical protein.	SipW-cognate class signal peptide.	0.432
SDF28468.1	SDF28355.1	SAMN05216218_10563	SAMN05216218_10560	SipW-cognate class signal peptide.	Hypothetical protein.	0.432
SDF28468.1	SDF28390.1	SAMN05216218_10563	SAMN05216218_10561	SipW-cognate class signal peptide.	Hypothetical protein.	0.432
SDF54767.1	SDF55098.1	SAMN05216218_10777	SAMN05216218_10785	Zinc transport system substrate-binding protein.	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	0.450
SDF55098.1	SDF54767.1	SAMN05216218_10785	SAMN05216218_10777	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Zinc transport system substrate-binding protein.	0.450

page 1 of 3

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About