STRINGSTRING
def def codA codA purH purH argE argE DSJ_03705 DSJ_03705 DSJ_04280 DSJ_04280 speB speB amiC amiC pyrG pyrG yfiH yfiH lpxC lpxC ampD ampD DSJ_06940 DSJ_06940 tadA tadA dapE dapE nagA nagA ybgL ybgL DSJ_09120 DSJ_09120 DSJ_09125 DSJ_09125 DSJ_09225 DSJ_09225 DSJ_09400 DSJ_09400 DSJ_09755 DSJ_09755 pyrC pyrC flgJ flgJ cobB cobB astB astB astE astE nadE nadE DSJ_13230 DSJ_13230 DSJ_13265 DSJ_13265 add add DSJ_13650 DSJ_13650 guaD guaD mpaA mpaA ribA ribA DSJ_14535 DSJ_14535 DSJ_14540 DSJ_14540 purU purU ansA ansA pncA pncA cheB cheB DSJ_15840 DSJ_15840 hisH hisH hisI hisI dcd dcd cdd cdd folE folE DSJ_16555 DSJ_16555 DSJ_17600 DSJ_17600 amiA amiA folD folD ribD ribD DSJ_19415 DSJ_19415 DSJ_19460 DSJ_19460 DSJ_19525 DSJ_19525 DSJ_19535 DSJ_19535 DSJ_21330 DSJ_21330 amiB amiB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
defPeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (170 aa)
codACytosine deaminase; Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
purHBifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (529 aa)
argEAcetylornithine deacetylase; Catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
DSJ_03705Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
DSJ_04280Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
speBAgmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily. (306 aa)
amiCN-acetylmuramoyl-L-alanine amidase; Hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
pyrGCTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. (545 aa)
yfiHHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family. (243 aa)
lpxCUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. (305 aa)
ampDN-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
DSJ_06940Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
tadAtRNA adenosine(34) deaminase TadA; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (164 aa)
dapESuccinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (375 aa)
nagAN-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
ybgLLactam utilization protein LamB; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (245 aa)
DSJ_09120Formimidoylglutamate deiminase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
DSJ_09125N-formylglutamate deformylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
DSJ_09225Beta-aspartyl-peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
DSJ_09400N-acetylmuramoyl-L-alanine amidase; Catalyzes the cleavage of the bond between muamic acid and l-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
DSJ_09755Competence protein TfoX; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
pyrCDihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. (347 aa)
flgJFlagellar rod assembly protein/muramidase FlgJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
cobBNAD-dependent protein deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sirtuin family. Class III subfamily. (277 aa)
astBN-succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2). (441 aa)
astESuccinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily. (331 aa)
nadEHypothetical protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. (274 aa)
DSJ_13230Hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (138 aa)
DSJ_13265Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
addOxidoreductase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily. (331 aa)
DSJ_13650Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
guaDGuanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (442 aa)
mpaAMurein peptide amidase A; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
ribAGTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate. (197 aa)
DSJ_14535Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (117 aa)
DSJ_14540Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (231 aa)
purUFormyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). (282 aa)
ansAL-asparaginase 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
pncANicotinamidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
cheBChemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (349 aa)
DSJ_15840Gamma-glutamyl-gamma-aminobutyrate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
hisHImidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (196 aa)
hisIBifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase; Catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; In the N-terminal section; belongs to the PRA-CH family. (203 aa)
dcddCTP deaminase; Catalyzes the deamination of dCTP to dUTP. (193 aa)
cddCytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis. (294 aa)
folEGTP cyclohydrolase I FolE; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
DSJ_16555Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1139 aa)
DSJ_17600Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
amiAN-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
folDBifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (288 aa)
ribDRiboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (367 aa)
DSJ_19415Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
DSJ_19460Acetylornithine deacetylase (ArgE); Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
DSJ_19525Allantoate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
DSJ_19535Hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (111 aa)
DSJ_21330L-seryl-tRNA selenium transferase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
amiBN-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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