STRINGSTRING
DSJ_00085 DSJ_00085 DSJ_00120 DSJ_00120 DSJ_00125 DSJ_00125 DSJ_00635 DSJ_00635 gntR gntR livK livK rbsR rbsR rbsB rbsB xylR xylR cytR cytR DSJ_03400 DSJ_03400 DSJ_03520 DSJ_03520 galR galR DSJ_04305 DSJ_04305 DSJ_04310 DSJ_04310 DSJ_04395 DSJ_04395 DSJ_05885 DSJ_05885 fruR fruR DSJ_07760 DSJ_07760 DSJ_07905 DSJ_07905 DSJ_11530 DSJ_11530 DSJ_11720 DSJ_11720 DSJ_12700 DSJ_12700 purR purR DSJ_13390 DSJ_13390 araF araF lacI lacI mglB mglB galS galS DSJ_19620 DSJ_19620 DSJ_20140 DSJ_20140 yraM yraM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DSJ_00085LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
DSJ_00120Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
DSJ_00125LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
DSJ_00635Cytochrome-c peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
gntRTranscriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
livKLeucine ABC transporter subunit substrate-binding protein LivK; With LivFGHM is involved in the high affinity leucine transport; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
rbsRTranscriptional regulator RbsR; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
rbsBD-ribose ABC transporter substrate-binding protein RbsB; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
xylRXylR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
cytRDNA-binding transcriptional regulator CytR; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
DSJ_03400Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
DSJ_03520Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
galRTranscriptional regulator GalR; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
DSJ_04305ABC transporter ATP-binding protein; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
DSJ_04310Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
DSJ_04395LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
DSJ_05885Urea ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
fruRDNA-binding transcriptional regulator FruR; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
DSJ_07760ABC transporter substrate-binding protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
DSJ_07905LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
DSJ_11530Rhizopine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
DSJ_11720Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
DSJ_12700ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
purRTranscriptional repressor PurR; Is the main repressor of the genes involved in the de novo synthesis of purine nucleotides, regulating purB, purC, purEK, purF, purHD, purL, purMN and guaBA expression. PurR is allosterically activated to bind its cognate DNA by binding the purine corepressors, hypoxanthine or guanine, thereby effecting transcription repression. (341 aa)
DSJ_13390LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
araFSugar ABC transporter substrate-binding protein; With AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
lacITranscriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
mglBMethyl-galactoside ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
galSDNA-binding transcriptional regulator GalS; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
DSJ_19620Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
DSJ_20140Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
yraMPenicillin-binding protein activator; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). Belongs to the LpoA family. (679 aa)
Your Current Organism:
Pantoea stewartii
NCBI taxonomy Id: 660596
Other names: P. stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii DC283, Pantoea stewartii subsp. stewartii str. DC283, Pantoea stewartii subsp. stewartii strain DC283
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