(45 nodes) Ribonuclease H-like superfamily network (Spirosoma endophyticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFF29695.1	Transposase DDE domain-containing protein. (285 aa)
	SFF41237.1	Transposase InsO and inactivated derivatives. (276 aa)
	SFF38719.1	Integrase core domain-containing protein. (182 aa)
	SFF36375.1	Integrase core domain-containing protein. (91 aa)
	SFC82284.1	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family. (212 aa)
	rnhB	RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (191 aa)
	SFD14171.1	DNA polymerase-3 subunit epsilon. (276 aa)
	SFD03868.1	Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (142 aa)
	SFD46108.1	Hypothetical protein. (245 aa)
	SFD43147.1	Putative transposase. (318 aa)
	SFD68046.1	Uncharacterized protein. (713 aa)
	SFD92134.1	Putative transposase. (218 aa)
	SFD98128.1	DNA polymerase-3 subunit epsilon. (180 aa)
	SFE06718.1	Integrase core domain-containing protein. (105 aa)
	polA	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (1024 aa)
	SFE26618.1	Transposase InsO and inactivated derivatives. (275 aa)
	SFE33571.1	Transposase. (519 aa)
	SFE28672.1	Integrase core domain-containing protein. (144 aa)
	SFE45824.1	DNA polymerase-3 subunit epsilon. (205 aa)
	SFE51528.1	Integrase core domain-containing protein. (94 aa)
	SFE51652.1	Integrase core domain-containing protein. (92 aa)
	SFE53050.1	Hypothetical protein. (809 aa)
	SFE51688.1	Integrase core domain-containing protein. (132 aa)
	SFE54424.1	Integrase core domain-containing protein. (178 aa)
	SFE68118.1	Integrase core domain-containing protein. (96 aa)
	SFE73422.1	Integrase core domain-containing protein. (93 aa)
	SFE73455.1	Integrase core domain-containing protein. (151 aa)
	ruvC	Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (196 aa)
	SFE82484.1	Putative transposase. (260 aa)
	SFE88125.1	Integrase core domain-containing protein. (98 aa)
	SFE91539.1	Integrase core domain-containing protein. (101 aa)
	SFE95014.1	Integrase core domain-containing protein. (144 aa)
	SFE95039.1	Transposase InsO and inactivated derivatives. (318 aa)
	SFE95738.1	HTH-like domain-containing protein. (245 aa)
	SFE97189.1	Transposase InsO and inactivated derivatives. (275 aa)
	SFF07236.1	Integrase core domain-containing protein. (76 aa)
	SFF07266.1	Integrase core domain-containing protein. (54 aa)
	SFF07299.1	Integrase core domain-containing protein. (82 aa)
	SFF07578.1	Transposase InsO and inactivated derivatives. (225 aa)
	SFF07635.1	Integrase core domain-containing protein. (100 aa)
	SFF18942.1	Transposase InsO and inactivated derivatives. (202 aa)
	SFF20477.1	Integrase core domain-containing protein. (143 aa)
	SFF33603.1	Integrase core domain-containing protein. (93 aa)
	SFF35848.1	Integrase core domain-containing protein. (103 aa)
	SFF36353.1	HTH-like domain-containing protein. (174 aa)

Your Current Organism:

Spirosoma endophyticum

NCBI taxonomy Id: 662367
Other names: DSM 26130, Flexibacteraceae bacterium EX36, LMG 27272, LMG:27272, S. endophyticum, Spirosoma endophyticum Fries et al. 2013, strain EX36

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFD14171.1	SFD98128.1	SAMN05216167_103473	SAMN05216167_10956	DNA polymerase-3 subunit epsilon.	DNA polymerase-3 subunit epsilon.	0.923
SFD14171.1	polA	SAMN05216167_103473	SAMN05216167_110183	DNA polymerase-3 subunit epsilon.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.566
SFD43147.1	SFF07236.1	SAMN05216167_10520	SAMN05216167_12718	Putative transposase.	Integrase core domain-containing protein.	0.485
SFD46108.1	polA	SAMN05216167_105117	SAMN05216167_110183	Hypothetical protein.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.999
SFD46108.1	rnhB	SAMN05216167_105117	SAMN05216167_103327	Hypothetical protein.	RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.856
SFD92134.1	SFF07236.1	SAMN05216167_108202	SAMN05216167_12718	Putative transposase.	Integrase core domain-containing protein.	0.432
SFD98128.1	SFD14171.1	SAMN05216167_10956	SAMN05216167_103473	DNA polymerase-3 subunit epsilon.	DNA polymerase-3 subunit epsilon.	0.923
SFD98128.1	SFE45824.1	SAMN05216167_10956	SAMN05216167_11444	DNA polymerase-3 subunit epsilon.	DNA polymerase-3 subunit epsilon.	0.919
SFD98128.1	polA	SAMN05216167_10956	SAMN05216167_110183	DNA polymerase-3 subunit epsilon.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.636
SFE06718.1	SFE51652.1	SAMN05216167_1101	SAMN05216167_1154	Integrase core domain-containing protein.	Integrase core domain-containing protein.	0.534
SFE06718.1	SFE73455.1	SAMN05216167_1101	SAMN05216167_11899	Integrase core domain-containing protein.	Integrase core domain-containing protein.	0.561
SFE06718.1	SFE88125.1	SAMN05216167_1101	SAMN05216167_12131	Integrase core domain-containing protein.	Integrase core domain-containing protein.	0.519
SFE06718.1	SFE95039.1	SAMN05216167_1101	SAMN05216167_1232	Integrase core domain-containing protein.	Transposase InsO and inactivated derivatives.	0.425
SFE06718.1	SFF38719.1	SAMN05216167_1101	SAMN05216167_1612	Integrase core domain-containing protein.	Integrase core domain-containing protein.	0.855
SFE26618.1	SFE51688.1	SAMN05216167_11214	SAMN05216167_1155	Transposase InsO and inactivated derivatives.	Integrase core domain-containing protein.	0.751
SFE26618.1	SFF07635.1	SAMN05216167_11214	SAMN05216167_12732	Transposase InsO and inactivated derivatives.	Integrase core domain-containing protein.	0.591
SFE28672.1	SFE51652.1	SAMN05216167_11262	SAMN05216167_1154	Integrase core domain-containing protein.	Integrase core domain-containing protein.	0.654
SFE28672.1	SFE73455.1	SAMN05216167_11262	SAMN05216167_11899	Integrase core domain-containing protein.	Integrase core domain-containing protein.	0.727
SFE28672.1	SFE88125.1	SAMN05216167_11262	SAMN05216167_12131	Integrase core domain-containing protein.	Integrase core domain-containing protein.	0.664
SFE28672.1	SFE95039.1	SAMN05216167_11262	SAMN05216167_1232	Integrase core domain-containing protein.	Transposase InsO and inactivated derivatives.	0.566

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