(16 nodes) UBX domain, and KEAP1-NFE2L2 pathway network (Trichophyton benhamiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARB_03964	ANK_REP_REGION domain-containing protein. (564 aa)
	ARB_05031	AAA family ATPase, putative. (696 aa)
	ARB_06029	Uncharacterized protein. (817 aa)
	ARB_06109	AZUL domain-containing protein. (761 aa)
	ARB_06832	Uncharacterized protein. (386 aa)
	ARB_06672	Uncharacterized protein. (808 aa)
	ARB_07033	Uncharacterized protein. (375 aa)
	ARB_00324	MPN domain-containing protein. (652 aa)
	ARB_00377	Uncharacterized protein. (272 aa)
	ARB_00936	UBX domain-containing protein. (526 aa)
	ARB_01043	UBX domain-containing protein. (523 aa)
	ARB_01577	U-box domain-containing protein. (1067 aa)
	ARB_01607	C2H2-type domain-containing protein. (335 aa)
	ARB_01811	UBX domain-containing protein. (526 aa)
	ARB_02498	OTU domain-containing protein. (333 aa)
	ARB_03311	Uncharacterized protein; Belongs to the AAA ATPase family. (908 aa)

Your Current Organism:

Trichophyton benhamiae

NCBI taxonomy Id: 663331
Other names: Arthroderma benhamiae CBS 112371, T. benhamiae CBS 112371, Trichophyton benhamiae CBS 112371

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARB_00324	ARB_00377	D4AVW0	D4AW13	MPN domain-containing protein.	Uncharacterized protein.	0.789
ARB_00324	ARB_00936	D4AVW0	D4AXL7	MPN domain-containing protein.	UBX domain-containing protein.	0.997
ARB_00324	ARB_01043	D4AVW0	D4AXX4	MPN domain-containing protein.	UBX domain-containing protein.	0.906
ARB_00324	ARB_01577	D4AVW0	D4AZF9	MPN domain-containing protein.	U-box domain-containing protein.	0.966
ARB_00324	ARB_01811	D4AVW0	D4B040	MPN domain-containing protein.	UBX domain-containing protein.	0.937
ARB_00324	ARB_02498	D4AVW0	D4B215	MPN domain-containing protein.	OTU domain-containing protein.	0.966
ARB_00324	ARB_03311	D4AVW0	D4B4C2	MPN domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.999
ARB_00324	ARB_03964	D4AVW0	D4AKD9	MPN domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.541
ARB_00324	ARB_05031	D4AVW0	D4AL35	MPN domain-containing protein.	AAA family ATPase, putative.	0.851
ARB_00324	ARB_06029	D4AVW0	D4AP62	MPN domain-containing protein.	Uncharacterized protein.	0.942
ARB_00324	ARB_06109	D4AVW0	D4APE1	MPN domain-containing protein.	AZUL domain-containing protein.	0.947
ARB_00324	ARB_06672	D4AVW0	D4ARD2	MPN domain-containing protein.	Uncharacterized protein.	0.975
ARB_00324	ARB_06832	D4AVW0	D4AR03	MPN domain-containing protein.	Uncharacterized protein.	0.815
ARB_00324	ARB_07033	D4AVW0	D4AS18	MPN domain-containing protein.	Uncharacterized protein.	0.999
ARB_00377	ARB_00324	D4AW13	D4AVW0	Uncharacterized protein.	MPN domain-containing protein.	0.789
ARB_00377	ARB_01811	D4AW13	D4B040	Uncharacterized protein.	UBX domain-containing protein.	0.933
ARB_00377	ARB_06109	D4AW13	D4APE1	Uncharacterized protein.	AZUL domain-containing protein.	0.779
ARB_00377	ARB_07033	D4AW13	D4AS18	Uncharacterized protein.	Uncharacterized protein.	0.933
ARB_00936	ARB_00324	D4AXL7	D4AVW0	UBX domain-containing protein.	MPN domain-containing protein.	0.997
ARB_00936	ARB_01043	D4AXL7	D4AXX4	UBX domain-containing protein.	UBX domain-containing protein.	0.907