(94 nodes) RNA Polymerase II Transcription Termination, and RNA recognition motif domain network (Papilio xuthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RR46_00718	Nuclear cap-binding protein subunit 1. (343 aa)
	RR46_01512	Putative ATP-dependent RNA helicase DHX30. (954 aa)
	RR46_01119	Longitudinals lacking protein, isoforms J/P/Q/S/Z. (616 aa)
	RR46_14545	Uncharacterized protein. (179 aa)
	RR46_14570	Zinc finger matrin-type protein CG9776. (830 aa)
	RR46_08328	RING finger and SPRY domain-containing protein 1. (490 aa)
	RR46_13297	RNA-binding protein lark. (381 aa)
	RR46_13367	Pinin. (412 aa)
	RR46_14988	Uncharacterized protein. (696 aa)
	RR46_15033	RNA-binding protein cabeza. (753 aa)
	RR46_13418	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (405 aa)
	RR46_13968	Serine/arginine-rich splicing factor 7. (173 aa)
	RR46_14258	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (422 aa)
	RR46_14343	APOBEC1 complementation factor. (724 aa)
	RR46_10727	Zinc finger Ran-binding domain-containing protein 2. (1367 aa)
	RR46_14869	Poly(RC)-binding protein 3. (537 aa)
	RR46_15004	TAR DNA-binding protein 43. (408 aa)
	RR46_10698	TAR DNA-binding protein 43. (443 aa)
	RR46_15034	Uncharacterized protein C17orf85-like. (460 aa)
	RR46_13101	Apoptotic chromatin condensation inducer in the nucleus. (899 aa)
	RR46_13057	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1. (648 aa)
	RR46_12868	Dosage compensation regulator. (1295 aa)
	RR46_08336	RING finger and SPRY domain-containing protein 1. (451 aa)
	RR46_08356	RING finger and SPRY domain-containing protein 1. (508 aa)
	RR46_06633	Uncharacterized protein. (180 aa)
	RR46_06673	SAP domain-containing ribonucleoprotein. (262 aa)
	RR46_05894	Regulator of nonsense transcripts 2. (1111 aa)
	RR46_04482	Coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial. (257 aa)
	RR46_11867	Serrate RNA effector molecule-like. (912 aa)
	RR46_11937	Regulator of nonsense transcripts 3A. (617 aa)
	RR46_08876	RNA-binding protein 1. (160 aa)
	RR46_10800	Protein mago nashi. (146 aa)
	RR46_12845	THO complex subunit 3. (328 aa)
	RR46_11296	THO complex subunit 4-A. (255 aa)
	RR46_06821	Y-box factor-like. (288 aa)
	RR46_11457	Transformer-2 protein-like beta. (256 aa)
	RR46_12530	Chorion class B protein Ld10; Belongs to the chorion protein family. (175 aa)
	RR46_04518	RNA-binding protein with serine-rich domain 1-A. (313 aa)
	RR46_12777	Putative ATP-dependent RNA helicase DDX43; Belongs to the DEAD box helicase family. (556 aa)
	RR46_12528	Chorion class B protein Ld10; Belongs to the chorion protein family. (175 aa)
	RR46_04938	La-related protein 7. (566 aa)
	RR46_09208	Serine/threonine-protein kinase SRPK1. (604 aa)
	RR46_05661	Poly(U)-binding-splicing factor half pint. (767 aa)
	RR46_11308	THO complex subunit 5-like. (689 aa)
	RR46_07395	FoP_duplication domain-containing protein. (243 aa)
	RR46_11117	Polypyrimidine tract-binding protein 2. (165 aa)
	RR46_11543	THO complex subunit 7-like. (209 aa)
	RR46_10989	Serine/arginine repetitive matrix protein 1. (966 aa)
	RR46_09407	Zinc finger CCCH domain-containing protein 11A. (537 aa)
	RR46_11009	Protein lin-28-like. (236 aa)
	RR46_09612	Regulator of nonsense transcripts 1-like. (775 aa)
	RR46_09633	Myelin expression factor 2. (664 aa)
	RR46_10089	Serine-arginine protein 55. (421 aa)
	RR46_04611	Y-box factor-like. (280 aa)
	RR46_04900	Splicing factor U2af 38 kDa subunit. (227 aa)
	RR46_10390	Sex-lethal-like. (286 aa)
	RR46_10052	Putative ATP-dependent RNA helicase DDX43; Belongs to the DEAD box helicase family. (615 aa)
	RR46_10282	Serine/arginine-rich splicing factor 1. (293 aa)
	RR46_03893	Heterogeneous nuclear ribonucleoprotein F. (352 aa)
	RR46_11116	Regulator of differentiation 1. (461 aa)
	RR46_03353	Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like. (317 aa)
	RR46_03354	Heterogeneous nuclear ribonucleoprotein A1. (339 aa)
	RR46_07576	Protein CASC3. (720 aa)
	RR46_06990	Nucleolysin TIA-1 isoform p40. (380 aa)
	RR46_03079	Heterogeneous nuclear ribonucleoprotein L. (317 aa)
	RR46_08555	Nucleolysin TIAR. (388 aa)
	RR46_06130	Zinc finger protein 207. (459 aa)
	RR46_03383	THO complex subunit 1. (674 aa)
	RR46_03477	TAR DNA-binding protein 43. (307 aa)
	RR46_09842	Serine/arginine-rich splicing factor 2. (198 aa)
	RR46_07675	Far upstream element-binding protein 1. (732 aa)
	RR46_06276	Nuclear cap-binding protein subunit 1. (501 aa)
	RR46_06405	Phosphorylated adapter RNA export protein. (401 aa)
	RR46_06278	Nuclear cap-binding protein subunit 1. (327 aa)
	RR46_07741	Serine/arginine-rich splicing factor 11. (92 aa)
	RR46_05180	THO complex subunit 2. (1461 aa)
	RR46_07738	Polyadenylate-binding protein 2. (225 aa)
	RR46_07748	Heterogeneous nuclear ribonucleoprotein K. (458 aa)
	RR46_01712	Uncharacterized protein. (308 aa)
	RR46_01713	Heterogeneous nuclear ribonucleoprotein Q. (334 aa)
	RR46_01806	SAP domain-containing protein. (153 aa)
	RR46_01714	Heterogeneous nuclear ribonucleoprotein R. (276 aa)
	RR46_04119	Tumor protein p63-regulated gene 1-like protein. (369 aa)
	RR46_04154	THO complex subunit 6. (325 aa)
	RR46_06229	Myelin expression factor 2. (607 aa)
	RR46_07740	Splicing regulatory glutamine/lysine-rich protein 1. (537 aa)
	RR46_01804	Heterogeneous nuclear ribonucleoprotein U-like protein 1. (1382 aa)
	RR46_04977	Repressor splicing factor 1. (158 aa)
	RR46_10260	ATP-dependent RNA helicase WM6. (425 aa)
	RR46_05293	Similar to CG32036. (175 aa)
	RR46_11378	Cold shock domain-containing protein CG9705. (129 aa)
	RR46_12587	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (166 aa)
	RR46_10663	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (161 aa)
	RR46_06594	Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins. (153 aa)

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_00718	RR46_01119	A0A0N0P9G8	A0A0N1ID56	Nuclear cap-binding protein subunit 1.	Longitudinals lacking protein, isoforms J/P/Q/S/Z.	0.562
RR46_00718	RR46_01512	A0A0N0P9G8	A0A0N1I2R1	Nuclear cap-binding protein subunit 1.	Putative ATP-dependent RNA helicase DHX30.	0.535
RR46_00718	RR46_01712	A0A0N0P9G8	A0A194QFM4	Nuclear cap-binding protein subunit 1.	Uncharacterized protein.	0.562
RR46_00718	RR46_01713	A0A0N0P9G8	A0A194QG02	Nuclear cap-binding protein subunit 1.	Heterogeneous nuclear ribonucleoprotein Q.	0.562
RR46_00718	RR46_01714	A0A0N0P9G8	A0A194QHD4	Nuclear cap-binding protein subunit 1.	Heterogeneous nuclear ribonucleoprotein R.	0.562
RR46_00718	RR46_01804	A0A0N0P9G8	A0A194QN05	Nuclear cap-binding protein subunit 1.	Heterogeneous nuclear ribonucleoprotein U-like protein 1.	0.601
RR46_00718	RR46_01806	A0A0N0P9G8	A0A194QH47	Nuclear cap-binding protein subunit 1.	SAP domain-containing protein.	0.601
RR46_00718	RR46_03079	A0A0N0P9G8	A0A194Q6P6	Nuclear cap-binding protein subunit 1.	Heterogeneous nuclear ribonucleoprotein L.	0.649
RR46_00718	RR46_03353	A0A0N0P9G8	A0A194Q3P8	Nuclear cap-binding protein subunit 1.	Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like.	0.745
RR46_00718	RR46_03354	A0A0N0P9G8	A0A194Q4P6	Nuclear cap-binding protein subunit 1.	Heterogeneous nuclear ribonucleoprotein A1.	0.745
RR46_00718	RR46_03383	A0A0N0P9G8	A0A194Q9D2	Nuclear cap-binding protein subunit 1.	THO complex subunit 1.	0.712
RR46_00718	RR46_03477	A0A0N0P9G8	A0A194Q9L2	Nuclear cap-binding protein subunit 1.	TAR DNA-binding protein 43.	0.667
RR46_00718	RR46_03893	A0A0N0P9G8	A0A194Q2G1	Nuclear cap-binding protein subunit 1.	Heterogeneous nuclear ribonucleoprotein F.	0.723
RR46_00718	RR46_04119	A0A0N0P9G8	A0A194QHI0	Nuclear cap-binding protein subunit 1.	Tumor protein p63-regulated gene 1-like protein.	0.611
RR46_00718	RR46_04154	A0A0N0P9G8	A0A194QHL6	Nuclear cap-binding protein subunit 1.	THO complex subunit 6.	0.641
RR46_00718	RR46_04518	A0A0N0P9G8	A0A194PTI9	Nuclear cap-binding protein subunit 1.	RNA-binding protein with serine-rich domain 1-A.	0.779
RR46_00718	RR46_04611	A0A0N0P9G8	A0A194Q022	Nuclear cap-binding protein subunit 1.	Y-box factor-like.	0.651
RR46_00718	RR46_04900	A0A0N0P9G8	A0A194Q031	Nuclear cap-binding protein subunit 1.	Splicing factor U2af 38 kDa subunit.	0.567
RR46_00718	RR46_04938	A0A0N0P9G8	A0A194PUZ7	Nuclear cap-binding protein subunit 1.	La-related protein 7.	0.667
RR46_00718	RR46_04977	A0A0N0P9G8	I4DJA6	Nuclear cap-binding protein subunit 1.	Repressor splicing factor 1.	0.616