(20 nodes) RNA polymerase II, core complex, and Cdc73/Paf1 complex network (Papilio xuthus)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	RR46_01457	RNA polymerase-associated protein Rtf1. (783 aa)
	RR46_14523	Uncharacterized protein. (466 aa)
	RR46_13427	DNA-directed RNA polymerase II subunit RPB7. (128 aa)
	RR46_13463	DNA-directed RNA polymerase II subunit RPB3. (275 aa)
	RR46_10518	Parafibromin. (568 aa)
	RR46_06648	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (132 aa)
	RR46_13119	Transcription elongation factor S-II. (292 aa)
	RR46_05929	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family. (1101 aa)
	RR46_11963	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (62 aa)
	RR46_11375	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (720 aa)
	RR46_08853	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	RR46_11546	RNA polymerase-associated protein CTR9-like. (427 aa)
	RR46_06731	RNA polymerase-associated protein LEO1. (705 aa)
	RR46_09420	RNA polymerase II-associated factor 1-like. (597 aa)
	RR46_07496	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (62 aa)
	RR46_05995	FACT complex subunit spt16. (1297 aa)
	RR46_02479	Transcription elongation factor SPT5. (1078 aa)
	RR46_02228	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	RR46_07446	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (116 aa)
	RR46_15131	DNA-directed RNA polymerase II 13.3 kDa polypeptide rpb11. (117 aa)

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_01457	RR46_02228	A0A0N1I9Z6	A0A194QQA8	RNA polymerase-associated protein Rtf1.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.921
RR46_01457	RR46_02479	A0A0N1I9Z6	A0A194QGZ7	RNA polymerase-associated protein Rtf1.	Transcription elongation factor SPT5.	0.963
RR46_01457	RR46_05929	A0A0N1I9Z6	A0A194PMY4	RNA polymerase-associated protein Rtf1.	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family.	0.929
RR46_01457	RR46_05995	A0A0N1I9Z6	A0A194Q8H6	RNA polymerase-associated protein Rtf1.	FACT complex subunit spt16.	0.962
RR46_01457	RR46_06648	A0A0N1I9Z6	A0A194PLJ5	RNA polymerase-associated protein Rtf1.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.919
RR46_01457	RR46_06731	A0A0N1I9Z6	A0A194PT20	RNA polymerase-associated protein Rtf1.	RNA polymerase-associated protein LEO1.	0.984
RR46_01457	RR46_07446	A0A0N1I9Z6	I4DKZ1	RNA polymerase-associated protein Rtf1.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.957
RR46_01457	RR46_07496	A0A0N1I9Z6	A0A194Q540	RNA polymerase-associated protein Rtf1.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.925
RR46_01457	RR46_08853	A0A0N1I9Z6	A0A194PRL7	RNA polymerase-associated protein Rtf1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.930
RR46_01457	RR46_09420	A0A0N1I9Z6	A0A194PZN5	RNA polymerase-associated protein Rtf1.	RNA polymerase II-associated factor 1-like.	0.983
RR46_01457	RR46_10518	A0A0N1I9Z6	A0A194PJQ3	RNA polymerase-associated protein Rtf1.	Parafibromin.	0.984
RR46_01457	RR46_11375	A0A0N1I9Z6	A0A194PQS3	RNA polymerase-associated protein Rtf1.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.963
RR46_01457	RR46_11546	A0A0N1I9Z6	A0A194PS92	RNA polymerase-associated protein Rtf1.	RNA polymerase-associated protein CTR9-like.	0.971
RR46_01457	RR46_11963	A0A0N1I9Z6	A0A194PQE3	RNA polymerase-associated protein Rtf1.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.925
RR46_01457	RR46_13119	A0A0N1I9Z6	A0A194PMJ0	RNA polymerase-associated protein Rtf1.	Transcription elongation factor S-II.	0.805
RR46_01457	RR46_13427	A0A0N1I9Z6	A0A194PFQ0	RNA polymerase-associated protein Rtf1.	DNA-directed RNA polymerase II subunit RPB7.	0.919
RR46_01457	RR46_13463	A0A0N1I9Z6	A0A194PG20	RNA polymerase-associated protein Rtf1.	DNA-directed RNA polymerase II subunit RPB3.	0.941
RR46_01457	RR46_14523	A0A0N1I9Z6	A0A194PEA0	RNA polymerase-associated protein Rtf1.	Uncharacterized protein.	0.814
RR46_01457	RR46_15131	A0A0N1I9Z6	I4DL18	RNA polymerase-associated protein Rtf1.	DNA-directed RNA polymerase II 13.3 kDa polypeptide rpb11.	0.914
RR46_02228	RR46_01457	A0A194QQA8	A0A0N1I9Z6	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	RNA polymerase-associated protein Rtf1.	0.921