(102 nodes) Motor neuron axon guidance network (Papilio xuthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RR46_07750	Protein disabled. (1471 aa)
	RR46_02025	cGMP-dependent protein kinase, isozyme 2 forms cD5/T2. (1054 aa)
	RR46_02058	Zinc finger protein 1. (806 aa)
	RR46_02027	cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B. (207 aa)
	RR46_01729	Uncharacterized protein. (363 aa)
	RR46_08233	Uncharacterized protein. (218 aa)
	RR46_01862	Insulin gene enhancer protein ISL-2. (249 aa)
	RR46_01723	Uncharacterized protein. (342 aa)
	RR46_08108	Uncharacterized protein. (132 aa)
	RR46_07846	Olfactomedin-like protein 2A. (806 aa)
	RR46_07778	Ras-like GTP-binding protein Rho1. (205 aa)
	RR46_04299	Uncharacterized protein. (295 aa)
	RR46_04345	Basic juvenile hormone-suppressible protein 1. (751 aa)
	RR46_08643	Storkhead-box protein 1. (171 aa)
	RR46_08583	GATA-binding factor C. (204 aa)
	RR46_05351	Tyrosine-protein phosphatase 10D. (1459 aa)
	RR46_08107	Tyrosine-protein phosphatase 69D. (1403 aa)
	RR46_09656	Cyclin-dependent kinase 5 activator. (351 aa)
	RR46_02634	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (326 aa)
	RR46_08109	Tyrosine-protein phosphatase 99A. (1554 aa)
	RR46_03459	Frizzled-2; Belongs to the G-protein coupled receptor Fz/Smo family. (443 aa)
	RR46_08647	Protein spaetzle. (429 aa)
	RR46_08642	Uncharacterized protein. (99 aa)
	RR46_05158	Teneurin-3. (2628 aa)
	RR46_06104	Guanylate cyclase. (1293 aa)
	RR46_08681	Netrin receptor UNC5C. (1070 aa)
	RR46_08581	GATA-binding factor C. (244 aa)
	RR46_08685	Netrin receptor unc-5. (554 aa)
	RR46_05350	Tyrosine-protein phosphatase 10D. (518 aa)
	RR46_08644	Uncharacterized protein. (758 aa)
	RR46_05314	Teneurin-2. (3047 aa)
	RR46_11111	Ig-like domain-containing protein. (271 aa)
	RR46_09052	Nucleolar protein 11. (584 aa)
	RR46_04652	Roundabout-like 1. (966 aa)
	RR46_05652	Basic juvenile hormone-suppressible protein 2. (671 aa)
	RR46_04651	Roundabout-like 2. (986 aa)
	RR46_10965	PDZ domain-containing protein GIPC1. (425 aa)
	RR46_11209	Spaetzle domain-containing protein. (965 aa)
	RR46_11069	Uncharacterized protein. (349 aa)
	RR46_11223	Uncharacterized protein. (292 aa)
	RR46_02428	Uncharacterized protein. (241 aa)
	RR46_11313	Cytochrome P450 315a1, mitochondrial. (409 aa)
	RR46_05656	Basic juvenile hormone-suppressible protein 2. (749 aa)
	RR46_05651	Arylphorin subunit alpha. (703 aa)
	RR46_04934	Ig-like domain-containing protein. (292 aa)
	RR46_05655	Basic juvenile hormone-suppressible protein 2. (714 aa)
	RR46_05650	Acidic juvenile hormone-suppressible protein 1. (706 aa)
	RR46_09059	Netrin-1. (348 aa)
	RR46_09058	Netrin-1. (392 aa)
	RR46_05654	Arylphorin subunit alpha. (954 aa)
	RR46_05887	Carboxypeptidase N subunit 2. (629 aa)
	RR46_04922	Uncharacterized protein. (366 aa)
	RR46_04917	Irregular chiasm C-roughest protein. (274 aa)
	RR46_12762	Chaoptin. (1130 aa)
	RR46_04921	Ig-like domain-containing protein. (346 aa)
	RR46_12507	Segmentation protein even-skipped. (287 aa)
	RR46_12930	LIM/homeobox protein Lhx3. (384 aa)
	RR46_08738	Nephrin. (754 aa)
	RR46_10725	Extracellular sulfatase SULF-1-like. (286 aa)
	RR46_11325	Matrix metalloproteinase-16. (190 aa)
	RR46_12167	Uncharacterized protein. (92 aa)
	RR46_11324	Matrix metalloproteinase-16. (604 aa)
	RR46_08871	Neurogenic locus Notch protein. (1725 aa)
	RR46_08870	Neurogenic locus Notch protein. (576 aa)
	RR46_12166	Neuroglian. (1140 aa)
	RR46_12165	Neuroglian. (92 aa)
	RR46_05809	Leucine-rich repeats and immunoglobulin-like domains protein 3. (529 aa)
	RR46_13129	Plexin-B. (776 aa)
	RR46_05903	Class E basic helix-loop-helix protein 22. (192 aa)
	RR46_05888	Uncharacterized protein. (230 aa)
	RR46_13128	Plexin-B. (856 aa)
	RR46_10794	Division abnormally delayed protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (601 aa)
	RR46_10724	Extracellular sulfatase SULF-1-like. (1133 aa)
	RR46_13710	Fasciclin-2. (813 aa)
	RR46_14217	Ig-like domain-containing protein. (249 aa)
	RR46_13794	Uncharacterized protein. (358 aa)
	RR46_13709	Fasciclin-2. (824 aa)
	RR46_08455	Basement membrane-specific heparan sulfate proteoglycan core protein. (3827 aa)
	RR46_15253	Collagen-like protein 2. (769 aa)
	RR46_15248	Uncharacterized protein. (94 aa)
	RR46_15252	Collagen alpha-1(XV) chain. (878 aa)
	RR46_15247	Collagen alpha-1(XV) chain. (361 aa)
	RR46_08413	Tyrosine-protein kinase. (1199 aa)
	RR46_08412	Uncharacterized protein. (89 aa)
	RR46_15276	Tyrosine-protein phosphatase Lar. (1916 aa)
	RR46_15251	Collagen alpha-1(XVIII) chain. (187 aa)
	RR46_15300	Tyrosine-protein kinase RYK. (611 aa)
	RR46_15250	Collagen-like protein 7. (558 aa)
	RR46_14690	Roundabout-like 2. (1204 aa)
	RR46_00987	Rho-related GTP-binding protein RhoE. (209 aa)
	RR46_01265	Filamin-A. (955 aa)
	RR46_00365	Insulin gene enhancer protein ISL-2. (223 aa)
	RR46_00988	Uncharacterized protein. (61 aa)
	RR46_00663	Plexin-B. (1894 aa)
	RR46_01202	Segment polarity protein dishevelled-like DVL-3. (619 aa)
	RR46_00159	Uncharacterized protein. (739 aa)
	RR46_00974	Uncharacterized protein. (271 aa)
	RR46_00728	Uncharacterized protein. (105 aa)
	RR46_00327	Roundabout-like 1. (841 aa)
	RR46_00700	Tyrosine-protein phosphatase 99A. (518 aa)
	RR46_00342	Sex-specific storage-protein 1. (696 aa)
	RR46_00729	Ig-like domain-containing protein. (279 aa)

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_00327	RR46_02634	A0A0N0PF87	A0A194Q9Z2	Roundabout-like 1.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.475
RR46_00327	RR46_05809	A0A0N0PF87	A0A194PML1	Roundabout-like 1.	Leucine-rich repeats and immunoglobulin-like domains protein 3.	0.429
RR46_00327	RR46_05887	A0A0N0PF87	A0A194PU23	Roundabout-like 1.	Carboxypeptidase N subunit 2.	0.429
RR46_00327	RR46_05888	A0A0N0PF87	A0A194PMH5	Roundabout-like 1.	Uncharacterized protein.	0.429
RR46_00327	RR46_08412	A0A0N0PF87	A0A194PF41	Roundabout-like 1.	Uncharacterized protein.	0.722
RR46_00327	RR46_08413	A0A0N0PF87	A0A194PFC7	Roundabout-like 1.	Tyrosine-protein kinase.	0.722
RR46_00327	RR46_12762	A0A0N0PF87	A0A194PTT8	Roundabout-like 1.	Chaoptin.	0.429
RR46_00342	RR46_11313	A0A0N0P9Y8	A0A194PWT9	Sex-specific storage-protein 1.	Cytochrome P450 315a1, mitochondrial.	0.532
RR46_00365	RR46_08581	A0A0N1IEE5	A0A194Q826	Insulin gene enhancer protein ISL-2.	GATA-binding factor C.	0.534
RR46_00365	RR46_08583	A0A0N1IEE5	A0A194QDL1	Insulin gene enhancer protein ISL-2.	GATA-binding factor C.	0.534
RR46_00365	RR46_12930	A0A0N1IEE5	A0A194PRK3	Insulin gene enhancer protein ISL-2.	LIM/homeobox protein Lhx3.	0.973
RR46_00663	RR46_00700	A0A0N1ICM6	A0A0N0PAE2	Plexin-B.	Tyrosine-protein phosphatase 99A.	0.448
RR46_00663	RR46_00987	A0A0N1ICM6	A0A0N1IN71	Plexin-B.	Rho-related GTP-binding protein RhoE.	0.725
RR46_00663	RR46_00988	A0A0N1ICM6	A0A0N1IDK1	Plexin-B.	Uncharacterized protein.	0.725
RR46_00663	RR46_05350	A0A0N1ICM6	A0A194Q7W9	Plexin-B.	Tyrosine-protein phosphatase 10D.	0.641
RR46_00663	RR46_05351	A0A0N1ICM6	A0A194QCC4	Plexin-B.	Tyrosine-protein phosphatase 10D.	0.641
RR46_00663	RR46_07778	A0A0N1ICM6	A0A194QF24	Plexin-B.	Ras-like GTP-binding protein Rho1.	0.725
RR46_00663	RR46_08107	A0A0N1ICM6	A0A194QBE4	Plexin-B.	Tyrosine-protein phosphatase 69D.	0.473
RR46_00663	RR46_08108	A0A0N1ICM6	A0A194QFT5	Plexin-B.	Uncharacterized protein.	0.473
RR46_00663	RR46_08109	A0A0N1ICM6	A0A194Q9Z0	Plexin-B.	Tyrosine-protein phosphatase 99A.	0.448