(60 nodes) Positive regulation of autophagy network (Papilio xuthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RR46_08368	Helix-loop-helix protein 13. (226 aa)
	RR46_08474	Nitrogen permease regulator 2-like protein. (511 aa)
	RR46_13912	Synaptojanin-1. (1101 aa)
	RR46_13720	Nitrogen permease regulator 3-like protein. (780 aa)
	RR46_12968	Bcl-2-related ovarian killer protein. (297 aa)
	RR46_06743	Eukaryotic translation initiation factor 2-alpha kinase 3. (975 aa)
	RR46_11757	Protein toll. (1242 aa)
	RR46_08856	Dual specificity mitogen-activated protein kinase kinase 7. (660 aa)
	RR46_11345	Autophagy-related protein 101. (503 aa)
	RR46_11534	Protein toll. (1281 aa)
	RR46_11505	WD repeat-containing protein mio. (882 aa)
	RR46_08982	Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (887 aa)
	RR46_06850	Ras-related protein Rab-21. (211 aa)
	RR46_11441	Nitrogen permease regulator 2-like protein. (400 aa)
	RR46_11501	WD repeat-containing protein 24. (526 aa)
	RR46_11307	Serine/threonine-protein kinase ULK2. (692 aa)
	RR46_11502	WD repeat-containing protein 24. (340 aa)
	RR46_11532	Insulin-like growth factor-binding protein complex acid labile subunit. (590 aa)
	RR46_05777	Nucleoporin seh1; Belongs to the WD repeat SEC13 family. (392 aa)
	RR46_11533	Protein toll. (633 aa)
	RR46_07406	Uncharacterized protein. (79 aa)
	RR46_09514	TNF receptor-associated factor 1. (526 aa)
	RR46_04676	Activating molecule in BECN1-regulated autophagy protein 1. (438 aa)
	RR46_10141	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1863 aa)
	RR46_04677	Activating molecule in BECN1-regulated autophagy protein 1. (1263 aa)
	RR46_10132	AP complex subunit beta. (870 aa)
	RR46_07317	Lysine-specific demethylase 6A. (955 aa)
	RR46_02547	Serine/threonine-protein kinase ULK3. (523 aa)
	RR46_03343	Cleavage stimulation factor subunit 2 tau variant. (178 aa)
	RR46_09471	Myotubularin-related protein 5. (1985 aa)
	RR46_09521	Hamartin. (924 aa)
	RR46_03344	Cleavage stimulation factor subunit 2. (240 aa)
	RR46_09616	Ubiquitin-like modifier-activating enzyme ATG7. (650 aa)
	RR46_10083	Short coiled-coil protein-like. (135 aa)
	RR46_08479	Uncharacterized protein. (480 aa)
	RR46_03750	Serine/threonine-protein kinase Doa. (925 aa)
	RR46_08481	Uncharacterized protein. (513 aa)
	RR46_08031	Sorting nexin-7. (178 aa)
	RR46_06121	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (441 aa)
	RR46_09681	Transmembrane protein 173. (329 aa)
	RR46_09726	Tuberin. (1104 aa)
	RR46_09727	Uncharacterized protein. (333 aa)
	RR46_02850	Sorting nexin-4. (421 aa)
	RR46_09693	Mitogen-activated protein kinase. (438 aa)
	RR46_06062	DEP domain-containing protein 5. (1440 aa)
	RR46_01875	Cleavage and polyadenylation specificity factor subunit 1. (1360 aa)
	RR46_01708	Serine/threonine-protein kinase LATS1. (1015 aa)
	RR46_09729	Tuberin. (352 aa)
	RR46_04020	Huntingtin. (1542 aa)
	RR46_04019	Huntingtin. (1412 aa)
	RR46_02200	Transcription factor EB. (583 aa)
	RR46_01976	Non-specific serine/threonine protein kinase. (522 aa)
	RR46_00819	DEP domain-containing protein 5. (860 aa)
	RR46_01322	Uncharacterized protein. (79 aa)
	RR46_00224	Huntingtin. (334 aa)
	RR46_00644	Cleavage and polyadenylation specificity factor subunit 1. (551 aa)
	RR46_00486	Cleavage and polyadenylation specificity factor subunit 1. (294 aa)
	RR46_01469	Cleavage and polyadenylation specificity factor subunit CG7185. (688 aa)
	RR46_00193	Uncharacterized protein. (79 aa)
	RR46_14622	TNF receptor-associated factor 6. (460 aa)

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_00224	RR46_04020	A0A0N1I607	A0A194QHZ9	Huntingtin.	Huntingtin.	0.449
RR46_00224	RR46_09693	A0A0N1I607	A0A194QBX3	Huntingtin.	Mitogen-activated protein kinase.	0.649
RR46_00224	RR46_10132	A0A0N1I607	A0A194Q1E7	Huntingtin.	AP complex subunit beta.	0.691
RR46_00224	RR46_10141	A0A0N1I607	A0A194Q0J3	Huntingtin.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.705
RR46_00486	RR46_00644	A0A0N1IJ00	A0A0N1IB36	Cleavage and polyadenylation specificity factor subunit 1.	Cleavage and polyadenylation specificity factor subunit 1.	0.922
RR46_00486	RR46_01469	A0A0N1IJ00	A0A0N1IN40	Cleavage and polyadenylation specificity factor subunit 1.	Cleavage and polyadenylation specificity factor subunit CG7185.	0.754
RR46_00486	RR46_03343	A0A0N1IJ00	A0A194Q3N8	Cleavage and polyadenylation specificity factor subunit 1.	Cleavage stimulation factor subunit 2 tau variant.	0.909
RR46_00486	RR46_03344	A0A0N1IJ00	A0A194Q4N6	Cleavage and polyadenylation specificity factor subunit 1.	Cleavage stimulation factor subunit 2.	0.909
RR46_00644	RR46_00486	A0A0N1IB36	A0A0N1IJ00	Cleavage and polyadenylation specificity factor subunit 1.	Cleavage and polyadenylation specificity factor subunit 1.	0.922
RR46_00644	RR46_01469	A0A0N1IB36	A0A0N1IN40	Cleavage and polyadenylation specificity factor subunit 1.	Cleavage and polyadenylation specificity factor subunit CG7185.	0.754
RR46_00644	RR46_03343	A0A0N1IB36	A0A194Q3N8	Cleavage and polyadenylation specificity factor subunit 1.	Cleavage stimulation factor subunit 2 tau variant.	0.911
RR46_00644	RR46_03344	A0A0N1IB36	A0A194Q4N6	Cleavage and polyadenylation specificity factor subunit 1.	Cleavage stimulation factor subunit 2.	0.911
RR46_00819	RR46_05777	A0A0N0PA20	A0A194PTR1	DEP domain-containing protein 5.	Nucleoporin seh1; Belongs to the WD repeat SEC13 family.	0.988
RR46_00819	RR46_08474	A0A0N0PA20	A0A194PG93	DEP domain-containing protein 5.	Nitrogen permease regulator 2-like protein.	0.981
RR46_00819	RR46_11441	A0A0N0PA20	A0A194PRZ5	DEP domain-containing protein 5.	Nitrogen permease regulator 2-like protein.	0.975
RR46_00819	RR46_11501	A0A0N0PA20	A0A194PS47	DEP domain-containing protein 5.	WD repeat-containing protein 24.	0.975
RR46_00819	RR46_11502	A0A0N0PA20	A0A194PSQ4	DEP domain-containing protein 5.	WD repeat-containing protein 24.	0.975
RR46_00819	RR46_11505	A0A0N0PA20	A0A194PR54	DEP domain-containing protein 5.	WD repeat-containing protein mio.	0.991
RR46_00819	RR46_13720	A0A0N0PA20	A0A194PIE6	DEP domain-containing protein 5.	Nitrogen permease regulator 3-like protein.	0.991
RR46_01322	RR46_09693	A0A0N0PAA0	A0A194QBX3	Uncharacterized protein.	Mitogen-activated protein kinase.	0.649