(15 nodes) Calcium-ion regulated exocytosis network (Papilio xuthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RR46_06265	Synaptotagmin-11. (488 aa)
	RR46_06299	Protein unc-13-like B. (2739 aa)
	RR46_05657	Synaptotagmin-15. (629 aa)
	RR46_12469	Synaptotagmin-7. (293 aa)
	RR46_08867	C2 domain-containing protein. (914 aa)
	RR46_10540	Regulating synaptic membrane exocytosis protein 2. (282 aa)
	RR46_08866	Uncharacterized protein. (904 aa)
	RR46_10543	Regulating synaptic membrane exocytosis protein 2. (1010 aa)
	RR46_10541	Uncharacterized protein. (855 aa)
	RR46_14057	Synaptotagmin 1. (438 aa)
	RR46_15182	Regulating synaptic membrane exocytosis protein 2. (1038 aa)
	RR46_14660	Synaptotagmin-1. (497 aa)
	RR46_01470	Synaptotagmin-10. (453 aa)
	RR46_01258	Calcium-dependent secretion activator. (1477 aa)
	RR46_02629	Phorbol ester/diacylglycerol-binding protein unc-13. (1170 aa)

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_01258	RR46_02629	A0A0N0PA63	A0A194Q8I3	Calcium-dependent secretion activator.	Phorbol ester/diacylglycerol-binding protein unc-13.	0.459
RR46_01258	RR46_06299	A0A0N0PA63	A0A194QI63	Calcium-dependent secretion activator.	Protein unc-13-like B.	0.459
RR46_01258	RR46_10540	A0A0N0PA63	A0A194PQ69	Calcium-dependent secretion activator.	Regulating synaptic membrane exocytosis protein 2.	0.539
RR46_01258	RR46_10541	A0A0N0PA63	A0A194PIN3	Calcium-dependent secretion activator.	Uncharacterized protein.	0.539
RR46_01258	RR46_10543	A0A0N0PA63	A0A194PJS9	Calcium-dependent secretion activator.	Regulating synaptic membrane exocytosis protein 2.	0.539
RR46_01470	RR46_02629	A0A0N1ID93	A0A194Q8I3	Synaptotagmin-10.	Phorbol ester/diacylglycerol-binding protein unc-13.	0.582
RR46_01470	RR46_06299	A0A0N1ID93	A0A194QI63	Synaptotagmin-10.	Protein unc-13-like B.	0.582
RR46_01470	RR46_10540	A0A0N1ID93	A0A194PQ69	Synaptotagmin-10.	Regulating synaptic membrane exocytosis protein 2.	0.676
RR46_01470	RR46_10541	A0A0N1ID93	A0A194PIN3	Synaptotagmin-10.	Uncharacterized protein.	0.676
RR46_01470	RR46_10543	A0A0N1ID93	A0A194PJS9	Synaptotagmin-10.	Regulating synaptic membrane exocytosis protein 2.	0.676
RR46_01470	RR46_15182	A0A0N1ID93	A0A194PF75	Synaptotagmin-10.	Regulating synaptic membrane exocytosis protein 2.	0.583
RR46_02629	RR46_01258	A0A194Q8I3	A0A0N0PA63	Phorbol ester/diacylglycerol-binding protein unc-13.	Calcium-dependent secretion activator.	0.459
RR46_02629	RR46_01470	A0A194Q8I3	A0A0N1ID93	Phorbol ester/diacylglycerol-binding protein unc-13.	Synaptotagmin-10.	0.582
RR46_02629	RR46_05657	A0A194Q8I3	A0A194Q0W0	Phorbol ester/diacylglycerol-binding protein unc-13.	Synaptotagmin-15.	0.570
RR46_02629	RR46_06265	A0A194Q8I3	A0A194QCB3	Phorbol ester/diacylglycerol-binding protein unc-13.	Synaptotagmin-11.	0.691
RR46_02629	RR46_08866	A0A194Q8I3	A0A194PQ14	Phorbol ester/diacylglycerol-binding protein unc-13.	Uncharacterized protein.	0.557
RR46_02629	RR46_08867	A0A194Q8I3	A0A194PR22	Phorbol ester/diacylglycerol-binding protein unc-13.	C2 domain-containing protein.	0.557
RR46_02629	RR46_10540	A0A194Q8I3	A0A194PQ69	Phorbol ester/diacylglycerol-binding protein unc-13.	Regulating synaptic membrane exocytosis protein 2.	0.999
RR46_02629	RR46_10541	A0A194Q8I3	A0A194PIN3	Phorbol ester/diacylglycerol-binding protein unc-13.	Uncharacterized protein.	0.999
RR46_02629	RR46_10543	A0A194Q8I3	A0A194PJS9	Phorbol ester/diacylglycerol-binding protein unc-13.	Regulating synaptic membrane exocytosis protein 2.	0.999