(44 nodes) Positive regulation of TOR signaling network (Papilio xuthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RR46_11501	WD repeat-containing protein 24. (526 aa)
	RR46_05777	Nucleoporin seh1; Belongs to the WD repeat SEC13 family. (392 aa)
	RR46_06868	Suppressor of cytokine signaling 7. (486 aa)
	RR46_12702	Cyclin-dependent kinase 6; Belongs to the protein kinase superfamily. (327 aa)
	RR46_06812	WW domain-containing adapter protein with coiled-coil. (519 aa)
	RR46_11502	WD repeat-containing protein 24. (340 aa)
	RR46_04956	PIH1 domain-containing protein 1. (249 aa)
	RR46_14709	G1/S-specific cyclin-D2; Belongs to the cyclin family. (96 aa)
	RR46_10448	DnaJ-like subfamily B member 13. (336 aa)
	RR46_11505	WD repeat-containing protein mio. (882 aa)
	RR46_11285	UPF0539 protein CG14977. (97 aa)
	RR46_11763	Ras-related GTP-binding protein C. (423 aa)
	RR46_05936	WD repeat-containing protein 59. (944 aa)
	RR46_10792	Ras-related GTP-binding protein A. (300 aa)
	RR46_01129	Myosin light chain kinase, smooth muscle. (655 aa)
	RR46_01437	Mitogen-activated protein kinase kinase kinase kinase 5. (144 aa)
	RR46_00151	Ras-related GTP-binding protein B. (115 aa)
	RR46_00996	Putative sodium-coupled neutral amino acid transporter 9. (402 aa)
	RR46_01012	Non-specific serine/threonine protein kinase; May play a role in the response to environmental stress. Appears to act upstream of the JUN N-terminal pathway. (1092 aa)
	RR46_01130	Uncharacterized protein. (75 aa)
	RR46_14708	G1/S-specific cyclin-D3. (115 aa)
	RR46_13424	Protein SEC13-like; Belongs to the WD repeat SEC13 family. (313 aa)
	RR46_10461	SH2B adapter protein 2. (475 aa)
	RR46_03284	RAC serine/threonine-protein kinase. (316 aa)
	RR46_03283	RAC-alpha serine/threonine-protein kinase. (147 aa)
	RR46_03285	RAC serine/threonine-protein kinase; Belongs to the protein kinase superfamily. (372 aa)
	RR46_03286	RAC serine/threonine-protein kinase. (192 aa)
	RR46_09729	Tuberin. (352 aa)
	RR46_09975	Ragulator complex protein LAMTOR2-like. (125 aa)
	RR46_09935	Protein E(Sev)2B. (211 aa)
	RR46_09727	Uncharacterized protein. (333 aa)
	RR46_09726	Tuberin. (1104 aa)
	RR46_05149	Receptor protein-tyrosine kinase. (1314 aa)
	RR46_03429	Mucolipin-3. (600 aa)
	RR46_05186	G1/S-specific cyclin-D2; Belongs to the cyclin family. (297 aa)
	RR46_03157	Ragulator complex protein LAMTOR1. (400 aa)
	RR46_04794	Ragulator complex protein LAMTOR3-like. (125 aa)
	RR46_02927	Protein melted. (961 aa)
	RR46_09521	Hamartin. (924 aa)
	RR46_11135	GTP-binding protein Rheb-like. (182 aa)
	RR46_03643	Protein HBXIP-like. (90 aa)
	RR46_06869	Uncharacterized protein. (62 aa)
	RR46_07316	SHC-transforming protein 1. (442 aa)
	RR46_09124	Folliculin. (428 aa)

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_00151	RR46_00996	A0A0N1IDE7	A0A0N1PEX9	Ras-related GTP-binding protein B.	Putative sodium-coupled neutral amino acid transporter 9.	0.969
RR46_00151	RR46_01012	A0A0N1IDE7	A0A0N1PF10	Ras-related GTP-binding protein B.	Non-specific serine/threonine protein kinase; May play a role in the response to environmental stress. Appears to act upstream of the JUN N-terminal pathway.	0.436
RR46_00151	RR46_01437	A0A0N1IDE7	A0A0N1ID71	Ras-related GTP-binding protein B.	Mitogen-activated protein kinase kinase kinase kinase 5.	0.436
RR46_00151	RR46_03157	A0A0N1IDE7	A0A194Q8U1	Ras-related GTP-binding protein B.	Ragulator complex protein LAMTOR1.	0.984
RR46_00151	RR46_03283	A0A0N1IDE7	A0A194QGP1	Ras-related GTP-binding protein B.	RAC-alpha serine/threonine-protein kinase.	0.704
RR46_00151	RR46_03284	A0A0N1IDE7	A0A194QGK1	Ras-related GTP-binding protein B.	RAC serine/threonine-protein kinase.	0.704
RR46_00151	RR46_03285	A0A0N1IDE7	A0A194QGX8	Ras-related GTP-binding protein B.	RAC serine/threonine-protein kinase; Belongs to the protein kinase superfamily.	0.704
RR46_00151	RR46_03286	A0A0N1IDE7	A0A194QIC0	Ras-related GTP-binding protein B.	RAC serine/threonine-protein kinase.	0.704
RR46_00151	RR46_03643	A0A0N1IDE7	A0A194PYT8	Ras-related GTP-binding protein B.	Protein HBXIP-like.	0.984
RR46_00151	RR46_04794	A0A0N1IDE7	A0A194Q8S2	Ras-related GTP-binding protein B.	Ragulator complex protein LAMTOR3-like.	0.982
RR46_00151	RR46_05777	A0A0N1IDE7	A0A194PTR1	Ras-related GTP-binding protein B.	Nucleoporin seh1; Belongs to the WD repeat SEC13 family.	0.773
RR46_00151	RR46_05936	A0A0N1IDE7	A0A194PPM4	Ras-related GTP-binding protein B.	WD repeat-containing protein 59.	0.781
RR46_00151	RR46_09124	A0A0N1IDE7	A0A194PV69	Ras-related GTP-binding protein B.	Folliculin.	0.980
RR46_00151	RR46_09521	A0A0N1IDE7	A0A194Q4H0	Ras-related GTP-binding protein B.	Hamartin.	0.785
RR46_00151	RR46_09726	A0A0N1IDE7	A0A194QAG3	Ras-related GTP-binding protein B.	Tuberin.	0.795
RR46_00151	RR46_09727	A0A0N1IDE7	A0A194QAR4	Ras-related GTP-binding protein B.	Uncharacterized protein.	0.795
RR46_00151	RR46_09729	A0A0N1IDE7	A0A194QGF0	Ras-related GTP-binding protein B.	Tuberin.	0.795
RR46_00151	RR46_09975	A0A0N1IDE7	A0A194QBD6	Ras-related GTP-binding protein B.	Ragulator complex protein LAMTOR2-like.	0.986
RR46_00151	RR46_10448	A0A0N1IDE7	A0A194PJH5	Ras-related GTP-binding protein B.	DnaJ-like subfamily B member 13.	0.823
RR46_00151	RR46_11135	A0A0N1IDE7	A0A194PZ38	Ras-related GTP-binding protein B.	GTP-binding protein Rheb-like.	0.828