(19 nodes) DNA endoreduplication network (Papilio xuthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RR46_03416	Myc protein. (204 aa)
	RR46_09206	DNA replication factor Cdt1. (644 aa)
	RR46_02568	Chromatin assembly factor 1 subunit A. (797 aa)
	RR46_06028	Transcription factor E2F4. (249 aa)
	RR46_03417	Uncharacterized protein. (227 aa)
	RR46_06026	Uncharacterized protein. (262 aa)
	RR46_05139	Tyrosine-protein kinase. (725 aa)
	RR46_09811	Uncharacterized protein. (377 aa)
	RR46_12002	WD repeat and HMG-box DNA-binding protein 1. (911 aa)
	RR46_13625	DNA helicase; Belongs to the MCM family. (729 aa)
	RR46_10622	Zinc finger protein 236. (911 aa)
	RR46_08429	F-box/WD repeat-containing protein 7. (782 aa)
	RR46_00553	WD repeat and HMG-box DNA-binding protein 1. (169 aa)
	RR46_01615	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (525 aa)
	RR46_00246	Uncharacterized protein. (129 aa)
	RR46_00564	WD repeat and HMG-box DNA-binding protein 1. (367 aa)
	RR46_00566	WD repeat and HMG-box DNA-binding protein 1. (406 aa)
	RR46_08132	Protein MCM10-like. (708 aa)
	RR46_07736	Retinoblastoma-like protein 1. (848 aa)

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_00553	RR46_01615	A0A0N1PEW7	A0A0N1IN55	WD repeat and HMG-box DNA-binding protein 1.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.972
RR46_00553	RR46_08132	A0A0N1PEW7	A0A194QBH0	WD repeat and HMG-box DNA-binding protein 1.	Protein MCM10-like.	0.729
RR46_00553	RR46_09206	A0A0N1PEW7	A0A194PX09	WD repeat and HMG-box DNA-binding protein 1.	DNA replication factor Cdt1.	0.637
RR46_00553	RR46_13625	A0A0N1PEW7	A0A194PI49	WD repeat and HMG-box DNA-binding protein 1.	DNA helicase; Belongs to the MCM family.	0.985
RR46_00564	RR46_00566	A0A0N0PAA8	A0A0N0P9Z5	WD repeat and HMG-box DNA-binding protein 1.	WD repeat and HMG-box DNA-binding protein 1.	0.899
RR46_00564	RR46_01615	A0A0N0PAA8	A0A0N1IN55	WD repeat and HMG-box DNA-binding protein 1.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.972
RR46_00564	RR46_08132	A0A0N0PAA8	A0A194QBH0	WD repeat and HMG-box DNA-binding protein 1.	Protein MCM10-like.	0.729
RR46_00564	RR46_09206	A0A0N0PAA8	A0A194PX09	WD repeat and HMG-box DNA-binding protein 1.	DNA replication factor Cdt1.	0.637
RR46_00564	RR46_13625	A0A0N0PAA8	A0A194PI49	WD repeat and HMG-box DNA-binding protein 1.	DNA helicase; Belongs to the MCM family.	0.985
RR46_00566	RR46_00564	A0A0N0P9Z5	A0A0N0PAA8	WD repeat and HMG-box DNA-binding protein 1.	WD repeat and HMG-box DNA-binding protein 1.	0.899
RR46_00566	RR46_01615	A0A0N0P9Z5	A0A0N1IN55	WD repeat and HMG-box DNA-binding protein 1.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.972
RR46_00566	RR46_08132	A0A0N0P9Z5	A0A194QBH0	WD repeat and HMG-box DNA-binding protein 1.	Protein MCM10-like.	0.729
RR46_00566	RR46_09206	A0A0N0P9Z5	A0A194PX09	WD repeat and HMG-box DNA-binding protein 1.	DNA replication factor Cdt1.	0.637
RR46_00566	RR46_13625	A0A0N0P9Z5	A0A194PI49	WD repeat and HMG-box DNA-binding protein 1.	DNA helicase; Belongs to the MCM family.	0.985
RR46_01615	RR46_00553	A0A0N1IN55	A0A0N1PEW7	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	WD repeat and HMG-box DNA-binding protein 1.	0.972
RR46_01615	RR46_00564	A0A0N1IN55	A0A0N0PAA8	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	WD repeat and HMG-box DNA-binding protein 1.	0.972
RR46_01615	RR46_00566	A0A0N1IN55	A0A0N0P9Z5	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	WD repeat and HMG-box DNA-binding protein 1.	0.972
RR46_01615	RR46_08132	A0A0N1IN55	A0A194QBH0	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	Protein MCM10-like.	0.972
RR46_01615	RR46_09206	A0A0N1IN55	A0A194PX09	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	DNA replication factor Cdt1.	0.664
RR46_01615	RR46_12002	A0A0N1IN55	A0A194PPV1	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	WD repeat and HMG-box DNA-binding protein 1.	0.972