(4 nodes) Eukaryotic 43S preinitiation complex network (Papilio xuthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RR46_15014	Eukaryotic translation initiation factor 1A, X-chromosomal; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (148 aa)
	RR46_03720	Eukaryotic translation initiation factor 3 subunit H. (147 aa)
	RR46_05404	Protein translation factor SUI1-like. (110 aa)
	RR46_03721	Eukaryotic translation initiation factor 3 subunit H. (111 aa)

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_03720	RR46_03721	A0A194PZV8	A0A194Q0Q2	Eukaryotic translation initiation factor 3 subunit H.	Eukaryotic translation initiation factor 3 subunit H.	0.898
RR46_03720	RR46_05404	A0A194PZV8	I4DIP9	Eukaryotic translation initiation factor 3 subunit H.	Protein translation factor SUI1-like.	0.945
RR46_03720	RR46_15014	A0A194PZV8	A0A194PK87	Eukaryotic translation initiation factor 3 subunit H.	Eukaryotic translation initiation factor 1A, X-chromosomal; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.975
RR46_03721	RR46_03720	A0A194Q0Q2	A0A194PZV8	Eukaryotic translation initiation factor 3 subunit H.	Eukaryotic translation initiation factor 3 subunit H.	0.898
RR46_03721	RR46_05404	A0A194Q0Q2	I4DIP9	Eukaryotic translation initiation factor 3 subunit H.	Protein translation factor SUI1-like.	0.945
RR46_03721	RR46_15014	A0A194Q0Q2	A0A194PK87	Eukaryotic translation initiation factor 3 subunit H.	Eukaryotic translation initiation factor 1A, X-chromosomal; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.975
RR46_05404	RR46_03720	I4DIP9	A0A194PZV8	Protein translation factor SUI1-like.	Eukaryotic translation initiation factor 3 subunit H.	0.945
RR46_05404	RR46_03721	I4DIP9	A0A194Q0Q2	Protein translation factor SUI1-like.	Eukaryotic translation initiation factor 3 subunit H.	0.945
RR46_05404	RR46_15014	I4DIP9	A0A194PK87	Protein translation factor SUI1-like.	Eukaryotic translation initiation factor 1A, X-chromosomal; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.999
RR46_15014	RR46_03720	A0A194PK87	A0A194PZV8	Eukaryotic translation initiation factor 1A, X-chromosomal; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Eukaryotic translation initiation factor 3 subunit H.	0.975
RR46_15014	RR46_03721	A0A194PK87	A0A194Q0Q2	Eukaryotic translation initiation factor 1A, X-chromosomal; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Eukaryotic translation initiation factor 3 subunit H.	0.975
RR46_15014	RR46_05404	A0A194PK87	I4DIP9	Eukaryotic translation initiation factor 1A, X-chromosomal; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Protein translation factor SUI1-like.	0.999