(37 nodes) Ribonuclease H superfamily network (Papilio xuthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RR46_00813	Integrase catalytic domain-containing protein. (1519 aa)
	RR46_01492	Integrase catalytic domain-containing protein. (965 aa)
	RR46_00776	Integrase catalytic domain-containing protein. (1726 aa)
	RR46_01552	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (311 aa)
	RR46_01242	RNase H domain-containing protein. (229 aa)
	RR46_14778	CCR4-NOT transcription complex subunit 7. (293 aa)
	RR46_13423	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2205 aa)
	RR46_15153	Poly(A)-specific ribonuclease PARN-like domain-containing protein 1. (495 aa)
	RR46_14202	Copia protein. (1111 aa)
	RR46_14069	Protein piwi; Belongs to the argonaute family. (954 aa)
	RR46_10796	DNA polymerase. (1464 aa)
	RR46_10866	Exonuclease 3'-5' domain-containing protein 2. (567 aa)
	RR46_12942	Putative exonuclease mut-7-like. (835 aa)
	RR46_13251	Oligoribonuclease, mitochondrial. (189 aa)
	RR46_10759	Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (315 aa)
	RR46_04484	Putative exonuclease GOR-like protein. (402 aa)
	RR46_06689	RNA exonuclease 1-like. (1006 aa)
	RR46_11970	Protein argonaute-4; Belongs to the argonaute family. (981 aa)
	RR46_14076	Protein argonaute-2. (1066 aa)
	RR46_11671	Exonuclease 3'-5' domain-containing protein 1. (854 aa)
	RR46_12224	Transposon Ty3-I Gag-Pol polyprotein. (593 aa)
	RR46_02417	Maternal protein exuperantia. (432 aa)
	RR46_06939	Exosome component 10. (735 aa)
	RR46_09287	Putative RNA exonuclease NEF-sp. (574 aa)
	RR46_05423	Uncharacterized protein. (396 aa)
	RR46_07592	Transmembrane protein 234-like. (443 aa)
	RR46_06970	RNA exonuclease 4. (278 aa)
	RR46_07608	Three prime repair exonuclease 2. (290 aa)
	RR46_07170	CCR4-NOT transcription complex subunit 7. (300 aa)
	RR46_06074	DNA polymerase. (1084 aa)
	RR46_09821	Poly(A)-specific ribonuclease PARN. (480 aa)
	RR46_02820	DNA polymerase theta. (1502 aa)
	RR46_02825	DNA polymerase. (1736 aa)
	RR46_05105	Exonuclease 3'-5' domain-containing protein 1. (314 aa)
	RR46_02043	Piwi-like protein 2; Belongs to the argonaute family. (925 aa)
	RR46_04071	Uncharacterized protein. (1696 aa)
	RR46_14277	RNA exonuclease 4. (160 aa)

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_00776	RR46_00813	A0A0N1IBH6	A0A0N0PAG9	Integrase catalytic domain-containing protein.	Integrase catalytic domain-containing protein.	0.408
RR46_00776	RR46_02820	A0A0N1IBH6	A0A194QBH4	Integrase catalytic domain-containing protein.	DNA polymerase theta.	0.417
RR46_00776	RR46_02825	A0A0N1IBH6	A0A194QBH8	Integrase catalytic domain-containing protein.	DNA polymerase.	0.456
RR46_00776	RR46_10796	A0A0N1IBH6	A0A194PJD5	Integrase catalytic domain-containing protein.	DNA polymerase.	0.402
RR46_00776	RR46_13423	A0A0N1IBH6	A0A194PFY3	Integrase catalytic domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.456
RR46_00813	RR46_00776	A0A0N0PAG9	A0A0N1IBH6	Integrase catalytic domain-containing protein.	Integrase catalytic domain-containing protein.	0.408
RR46_00813	RR46_01492	A0A0N0PAG9	A0A0N1I390	Integrase catalytic domain-containing protein.	Integrase catalytic domain-containing protein.	0.400
RR46_00813	RR46_02820	A0A0N0PAG9	A0A194QBH4	Integrase catalytic domain-containing protein.	DNA polymerase theta.	0.417
RR46_00813	RR46_02825	A0A0N0PAG9	A0A194QBH8	Integrase catalytic domain-containing protein.	DNA polymerase.	0.456
RR46_00813	RR46_04071	A0A0N0PAG9	A0A194QJ48	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.407
RR46_00813	RR46_10796	A0A0N0PAG9	A0A194PJD5	Integrase catalytic domain-containing protein.	DNA polymerase.	0.402
RR46_00813	RR46_13423	A0A0N0PAG9	A0A194PFY3	Integrase catalytic domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.456
RR46_01492	RR46_00813	A0A0N1I390	A0A0N0PAG9	Integrase catalytic domain-containing protein.	Integrase catalytic domain-containing protein.	0.400
RR46_01492	RR46_02820	A0A0N1I390	A0A194QBH4	Integrase catalytic domain-containing protein.	DNA polymerase theta.	0.417
RR46_01492	RR46_02825	A0A0N1I390	A0A194QBH8	Integrase catalytic domain-containing protein.	DNA polymerase.	0.456
RR46_01492	RR46_10796	A0A0N1I390	A0A194PJD5	Integrase catalytic domain-containing protein.	DNA polymerase.	0.402
RR46_01492	RR46_13423	A0A0N1I390	A0A194PFY3	Integrase catalytic domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.456
RR46_01552	RR46_02820	A0A0N1IC03	A0A194QBH4	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	DNA polymerase theta.	0.459
RR46_01552	RR46_02825	A0A0N1IC03	A0A194QBH8	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	DNA polymerase.	0.668
RR46_01552	RR46_06074	A0A0N1IC03	A0A194Q8C6	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	DNA polymerase.	0.801