(22 nodes) DNA/RNA polymerase superfamily network (Papilio xuthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RR46_00813	Integrase catalytic domain-containing protein. (1519 aa)
	RR46_00454	RNA-directed DNA polymerase from mobile element jockey. (618 aa)
	RR46_00590	Retrovirus-related Pol polyprotein from transposon gypsy. (119 aa)
	RR46_01492	Integrase catalytic domain-containing protein. (965 aa)
	RR46_00776	Integrase catalytic domain-containing protein. (1726 aa)
	RR46_00170	DNA polymerase subunit gamma-1, mitochondrial. (222 aa)
	RR46_00789	RNA-directed DNA polymerase from mobile element jockey. (1015 aa)
	RR46_13423	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2205 aa)
	RR46_14202	Copia protein. (1111 aa)
	RR46_13675	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (868 aa)
	RR46_10796	DNA polymerase. (1464 aa)
	RR46_12224	Transposon Ty3-I Gag-Pol polyprotein. (593 aa)
	RR46_05362	Putative RNA-directed DNA polymerase from transposon X-element. (519 aa)
	RR46_04818	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1399 aa)
	RR46_02937	DNA polymerase eta. (773 aa)
	RR46_08526	DNA polymerase iota. (602 aa)
	RR46_06074	DNA polymerase. (1084 aa)
	RR46_02820	DNA polymerase theta. (1502 aa)
	RR46_02825	DNA polymerase. (1736 aa)
	RR46_03173	DNA polymerase subunit gamma-1, mitochondrial. (1161 aa)
	RR46_03239	Putative RNA-directed DNA polymerase from transposon BS. (439 aa)
	RR46_04071	Uncharacterized protein. (1696 aa)

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_00170	RR46_02820	A0A0N1IHL5	A0A194QBH4	DNA polymerase subunit gamma-1, mitochondrial.	DNA polymerase theta.	0.450
RR46_00170	RR46_02825	A0A0N1IHL5	A0A194QBH8	DNA polymerase subunit gamma-1, mitochondrial.	DNA polymerase.	0.543
RR46_00170	RR46_04818	A0A0N1IHL5	A0A194Q4A8	DNA polymerase subunit gamma-1, mitochondrial.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.498
RR46_00170	RR46_06074	A0A0N1IHL5	A0A194Q8C6	DNA polymerase subunit gamma-1, mitochondrial.	DNA polymerase.	0.548
RR46_00170	RR46_10796	A0A0N1IHL5	A0A194PJD5	DNA polymerase subunit gamma-1, mitochondrial.	DNA polymerase.	0.521
RR46_00170	RR46_13423	A0A0N1IHL5	A0A194PFY3	DNA polymerase subunit gamma-1, mitochondrial.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.549
RR46_00776	RR46_00813	A0A0N1IBH6	A0A0N0PAG9	Integrase catalytic domain-containing protein.	Integrase catalytic domain-containing protein.	0.408
RR46_00776	RR46_02820	A0A0N1IBH6	A0A194QBH4	Integrase catalytic domain-containing protein.	DNA polymerase theta.	0.417
RR46_00776	RR46_02825	A0A0N1IBH6	A0A194QBH8	Integrase catalytic domain-containing protein.	DNA polymerase.	0.456
RR46_00776	RR46_10796	A0A0N1IBH6	A0A194PJD5	Integrase catalytic domain-containing protein.	DNA polymerase.	0.402
RR46_00776	RR46_13423	A0A0N1IBH6	A0A194PFY3	Integrase catalytic domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.456
RR46_00813	RR46_00776	A0A0N0PAG9	A0A0N1IBH6	Integrase catalytic domain-containing protein.	Integrase catalytic domain-containing protein.	0.408
RR46_00813	RR46_01492	A0A0N0PAG9	A0A0N1I390	Integrase catalytic domain-containing protein.	Integrase catalytic domain-containing protein.	0.400
RR46_00813	RR46_02820	A0A0N0PAG9	A0A194QBH4	Integrase catalytic domain-containing protein.	DNA polymerase theta.	0.417
RR46_00813	RR46_02825	A0A0N0PAG9	A0A194QBH8	Integrase catalytic domain-containing protein.	DNA polymerase.	0.456
RR46_00813	RR46_04071	A0A0N0PAG9	A0A194QJ48	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.407
RR46_00813	RR46_10796	A0A0N0PAG9	A0A194PJD5	Integrase catalytic domain-containing protein.	DNA polymerase.	0.402
RR46_00813	RR46_13423	A0A0N0PAG9	A0A194PFY3	Integrase catalytic domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.456
RR46_01492	RR46_00813	A0A0N1I390	A0A0N0PAG9	Integrase catalytic domain-containing protein.	Integrase catalytic domain-containing protein.	0.400
RR46_01492	RR46_02820	A0A0N1I390	A0A194QBH4	Integrase catalytic domain-containing protein.	DNA polymerase theta.	0.417