(50 nodes) RNA polymerase network (Papilio xuthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RR46_05929	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family. (1101 aa)
	RR46_13119	Transcription elongation factor S-II. (292 aa)
	RR46_13496	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (298 aa)
	RR46_13326	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1375 aa)
	RR46_06648	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (132 aa)
	RR46_15214	Uncharacterized protein. (319 aa)
	RR46_12856	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1072 aa)
	RR46_10463	Putative 28 kDa Golgi SNARE protein. (538 aa)
	RR46_14314	DNA-directed RNA polymerase III subunit RPC5. (490 aa)
	RR46_13480	DNA-directed RNA polymerases I and III subunit RPAC1. (331 aa)
	RR46_13539	Transcriptional adapter. (445 aa)
	RR46_13463	DNA-directed RNA polymerase II subunit RPB3. (275 aa)
	RR46_13427	DNA-directed RNA polymerase II subunit RPB7. (128 aa)
	RR46_08422	Protein angel-like 2. (523 aa)
	RR46_15042	Protein angel. (364 aa)
	RR46_15186	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (218 aa)
	RR46_14523	Uncharacterized protein. (466 aa)
	RR46_15031	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1139 aa)
	RR46_01467	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (506 aa)
	RR46_00297	DNA-directed RNA polymerase III subunit RPC1. (230 aa)
	RR46_01031	Mediator of RNA polymerase II transcription subunit 26. (680 aa)
	RR46_00286	DNA-directed RNA polymerase I subunit RPA2. (308 aa)
	RR46_03492	Similar to CG14701. (83 aa)
	RR46_15131	DNA-directed RNA polymerase II 13.3 kDa polypeptide rpb11. (117 aa)
	RR46_02228	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	RR46_02001	DUF2236 domain-containing protein. (452 aa)
	RR46_02005	DUF2236 domain-containing protein. (487 aa)
	RR46_02000	DUF2236 domain-containing protein. (423 aa)
	RR46_02004	Uncharacterized protein. (412 aa)
	RR46_02002	DUF2236 domain-containing protein. (373 aa)
	RR46_09963	DNA-directed RNA polymerase I subunit RPA43. (294 aa)
	RR46_08209	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (120 aa)
	RR46_08482	Uncharacterized protein. (479 aa)
	RR46_05998	Chromodomain-helicase-DNA-binding protein Mi-2-like. (1974 aa)
	RR46_07120	Coagulation factor V. (529 aa)
	RR46_02723	Transcriptional adapter 2A. (431 aa)
	RR46_07496	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (62 aa)
	RR46_05383	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	RR46_04637	DNA-directed RNA polymerase I subunit RPA1. (1536 aa)
	RR46_10385	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	RR46_06934	Titin. (8808 aa)
	RR46_07416	DNA-directed RNA polymerase III subunit RPC4. (359 aa)
	RR46_09358	DNA-directed RNA polymerase III subunit RPC8. (215 aa)
	RR46_09128	Protein LSM14-like B-B. (565 aa)
	RR46_11874	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1776 aa)
	RR46_06935	Titin. (2732 aa)
	RR46_08853	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	RR46_11973	PHD finger protein 3. (1785 aa)
	RR46_11963	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (62 aa)
	RR46_04452	DNA-directed RNA polymerase II 16 kDa polypeptide. (219 aa)

Your Current Organism:

Papilio xuthus

NCBI taxonomy Id: 66420
Other names: Asian swallowtail, Chinese swallowtail, Chinese yellow swallowtail, P. xuthus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR46_00286	RR46_00297	A0A0N0P9Z1	A0A0N1ID20	DNA-directed RNA polymerase I subunit RPA2.	DNA-directed RNA polymerase III subunit RPC1.	0.966
RR46_00286	RR46_01031	A0A0N0P9Z1	A0A0N1IAM1	DNA-directed RNA polymerase I subunit RPA2.	Mediator of RNA polymerase II transcription subunit 26.	0.845
RR46_00286	RR46_01467	A0A0N0P9Z1	A0A0N1IMV8	DNA-directed RNA polymerase I subunit RPA2.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
RR46_00286	RR46_02000	A0A0N0P9Z1	A0A194QK08	DNA-directed RNA polymerase I subunit RPA2.	DUF2236 domain-containing protein.	0.813
RR46_00286	RR46_02001	A0A0N0P9Z1	A0A194QP37	DNA-directed RNA polymerase I subunit RPA2.	DUF2236 domain-containing protein.	0.813
RR46_00286	RR46_02002	A0A0N0P9Z1	A0A194QIA3	DNA-directed RNA polymerase I subunit RPA2.	DUF2236 domain-containing protein.	0.813
RR46_00286	RR46_02004	A0A0N0P9Z1	A0A194QIM4	DNA-directed RNA polymerase I subunit RPA2.	Uncharacterized protein.	0.813
RR46_00286	RR46_02005	A0A0N0P9Z1	A0A194QK14	DNA-directed RNA polymerase I subunit RPA2.	DUF2236 domain-containing protein.	0.813
RR46_00286	RR46_02228	A0A0N0P9Z1	A0A194QQA8	DNA-directed RNA polymerase I subunit RPA2.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.992
RR46_00286	RR46_04637	A0A0N0P9Z1	A0A194Q0Z2	DNA-directed RNA polymerase I subunit RPA2.	DNA-directed RNA polymerase I subunit RPA1.	0.998
RR46_00286	RR46_05383	A0A0N0P9Z1	A0A194Q2H6	DNA-directed RNA polymerase I subunit RPA2.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.985
RR46_00286	RR46_05929	A0A0N0P9Z1	A0A194PMY4	DNA-directed RNA polymerase I subunit RPA2.	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family.	0.470
RR46_00286	RR46_05998	A0A0N0P9Z1	A0A194Q834	DNA-directed RNA polymerase I subunit RPA2.	Chromodomain-helicase-DNA-binding protein Mi-2-like.	0.626
RR46_00286	RR46_06648	A0A0N0P9Z1	A0A194PLJ5	DNA-directed RNA polymerase I subunit RPA2.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.993
RR46_00286	RR46_07120	A0A0N0P9Z1	A0A194Q6A0	DNA-directed RNA polymerase I subunit RPA2.	Coagulation factor V.	0.727
RR46_00286	RR46_07416	A0A0N0P9Z1	A0A194PY41	DNA-directed RNA polymerase I subunit RPA2.	DNA-directed RNA polymerase III subunit RPC4.	0.973
RR46_00286	RR46_07496	A0A0N0P9Z1	A0A194Q540	DNA-directed RNA polymerase I subunit RPA2.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.987
RR46_00286	RR46_08209	A0A0N0P9Z1	A0A194QAA8	DNA-directed RNA polymerase I subunit RPA2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.989
RR46_00286	RR46_08482	A0A0N0P9Z1	A0A194Q8Z7	DNA-directed RNA polymerase I subunit RPA2.	Uncharacterized protein.	0.902
RR46_00286	RR46_08853	A0A0N0P9Z1	A0A194PRL7	DNA-directed RNA polymerase I subunit RPA2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.885