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miaB miaB ycfD ycfD ycfC ycfC ycfB ycfB ymfB ymfB ymfC ymfC ydaO ydaO yheL yheL yheM yheM yheN yheN yheO yheO fkpA fkpA slyX slyX
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
miaBUPF0004 protein PA3980; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (480 aa)
ycfDUncharacterized protein ycfD; Cupin 4, Cupin superfamily protein. (375 aa)
ycfCUPF0274 protein ycfC; Protein of unknown function DUF489, Protein of unknown function (DUF489). (214 aa)
ycfBtRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln), leading to the formation of s(2)U34, the first step of tRNA-mnm(5)s(2)U34 synthesis. Sulfur is provided by IscS, via a sulfur-relay system. Binds ATP and its substrate tRNAs; Belongs to the MnmA/TRMU family. (369 aa)
ymfBPutative phosphohydrolase; NUDIX, NUDIX domain; Belongs to the Nudix hydrolase family. NudJ subfamily. (158 aa)
ymfCRibosomal large subunit pseudouridine synthase E (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E), Pseudouridine synthase, Rsu, RNA pseudouridylate synthase, TIGR00093: conserved hypothetical protein; Belongs to the pseudouridine synthase RsuA family. (218 aa)
ydaOUPF0021 protein HI1371.1; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. (309 aa)
yheLPutative tRNA 2-thiouridine synthesizing protein B; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. (95 aa)
yheMProtein tusC (tRNA 2-thiouridine synthesizing protein C); Belongs to the DsrF/TusC family. (119 aa)
yheNPutative tRNA 2-thiouridine synthesizing protein D; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE. (128 aa)
yheOUncharacterized protein yheO; YheO-like, YheO-like PAS domain. (240 aa)
fkpAFKBP-type peptidyl-prolyl cis-trans isomerase fkpA precursor (PPIase) (Rotamase). (278 aa)
slyXProtein slyX homolog; SlyX, SlyX; Belongs to the SlyX family. (72 aa)
Your Current Organism:
Erwinia amylovora
NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430
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