(8 nodes) Oligopeptide transmembrane transporter activity network (Erwinia amylovora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ophB	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family. (329 aa)
	yliC	Binding-protein-dependent transport systems inner membrane component, The Peptide/Opine/Nickel Uptake Transporter (PepT) Family, TC 3.A.1.5.11 Inner membrane ABC transporter permease protein yliC. (306 aa)
	ydgR	Putative tripeptide transporter permease; Proton-dependent permease that transports di- and tripeptides; Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpA subfamily. (492 aa)
	sapB	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.5 Peptide transport system permease protein sapB. (321 aa)
	dppC3	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family. (300 aa)
	dppB3	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family. (339 aa)
	dppB1	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family. (351 aa)
	EAMY_0922	Hypothetical protein; Oligopeptide transporter OPT superfamily. (519 aa)

Your Current Organism:

Erwinia amylovora

NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dppB1	dppC3	EAMY_0906	EAMY_3611	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	0.869
dppB3	dppC3	EAMY_3612	EAMY_3611	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	0.998
dppC3	dppB1	EAMY_3611	EAMY_0906	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	0.869
dppC3	dppB3	EAMY_3611	EAMY_3612	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	0.998
dppC3	ophB	EAMY_3611	EAMY_1073	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	0.840
dppC3	sapB	EAMY_3611	EAMY_1881	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.5 Peptide transport system permease protein sapB.	0.773
dppC3	yliC	EAMY_3611	EAMY_1291	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Binding-protein-dependent transport systems inner membrane component, The Peptide/Opine/Nickel Uptake Transporter (PepT) Family, TC 3.A.1.5.11 Inner membrane ABC transporter permease protein yliC.	0.854
ophB	dppC3	EAMY_1073	EAMY_3611	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	0.840
sapB	dppC3	EAMY_1881	EAMY_3611	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.5 Peptide transport system permease protein sapB.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	0.773
yliC	dppC3	EAMY_1291	EAMY_3611	Binding-protein-dependent transport systems inner membrane component, The Peptide/Opine/Nickel Uptake Transporter (PepT) Family, TC 3.A.1.5.11 Inner membrane ABC transporter permease protein yliC.	Binding-protein-dependent transport systems inner membrane component, TC 3.A.1.5.-The Peptide/Opine/Nickel Uptake Transporter (PepT) Family.	0.854