(8 nodes) ArsR-like helix-turn-helix domain network (Erwinia amylovora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	arsR	Uncharacterized HTH-type transcriptional regulator MJ1325; Bacterial regulatory protein, ArsR. (104 aa)
	ybaO	Bacterial regulatory proteins, AsnC/Lrp, AsnC family. (157 aa)
	lrp	Bacterial regulatory proteins, AsnC family. (164 aa)
	EAMY_2200	Bacterial regulatory proteins, AsnC/Lrp, AsnC family. (176 aa)
	vacB	Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. Belongs to the RNR ribonuclease family. RNase R subfamily. (810 aa)
	asnC	Bacterial regulatory proteins, AsnC/Lrp, AsnC family. (153 aa)
	EAMY_0505	Bacterial regulatory proteins, AsnC/Lrp, AsnC family. (161 aa)
	iclR	Transcriptional regulator IclR, C-terminal, IclR helix-turn-helix domain. (263 aa)

Your Current Organism:

Erwinia amylovora

NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAMY_0505	asnC	EAMY_0505	EAMY_0002	Bacterial regulatory proteins, AsnC/Lrp, AsnC family.	Bacterial regulatory proteins, AsnC/Lrp, AsnC family.	0.771
arsR	asnC	EAMY_3247	EAMY_0002	Uncharacterized HTH-type transcriptional regulator MJ1325; Bacterial regulatory protein, ArsR.	Bacterial regulatory proteins, AsnC/Lrp, AsnC family.	0.479
asnC	EAMY_0505	EAMY_0002	EAMY_0505	Bacterial regulatory proteins, AsnC/Lrp, AsnC family.	Bacterial regulatory proteins, AsnC/Lrp, AsnC family.	0.771
asnC	arsR	EAMY_0002	EAMY_3247	Bacterial regulatory proteins, AsnC/Lrp, AsnC family.	Uncharacterized HTH-type transcriptional regulator MJ1325; Bacterial regulatory protein, ArsR.	0.479
asnC	ybaO	EAMY_0002	EAMY_0992	Bacterial regulatory proteins, AsnC/Lrp, AsnC family.	Bacterial regulatory proteins, AsnC/Lrp, AsnC family.	0.762
ybaO	asnC	EAMY_0992	EAMY_0002	Bacterial regulatory proteins, AsnC/Lrp, AsnC family.	Bacterial regulatory proteins, AsnC/Lrp, AsnC family.	0.762