(17 nodes) Periplasmic binding protein-like I network (Erwinia amylovora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rbsB	D-ribose-binding periplasmic protein precursor, Periplasmic binding protein/LacI transcriptional regulator, TC 3.A.1.2.1 D-ribose-binding periplasmic protein precursor. (293 aa)
	rbsR1	Ribose operon repressor, Periplasmic binding protein/LacI transcriptional regulator, Periplasmic binding proteins and sugar binding domain of the LacI family, ccpA: catabolite control protein A. (333 aa)
	cytR	HTH-type transcriptional repressor cytR; regulator for deo operon, udp, cdd, tsx, NupC, and NupG. (345 aa)
	ascG	HTH-type transcriptional repressor purR (Purine nucleotide synthesis repressor) (Pur regulon repressor), Periplasmic binding protein/LacI transcriptional regulator, Bacterial regulatory proteins, lacI family, ccpA: catabolite control protein A. (341 aa)
	galR	HTH-type transcriptional repressor purR (Purine nucleotide synthesis repressor) (Pur regulon repressor), Periplasmic binding protein/LacI transcriptional regulator, Periplasmic binding proteins and sugar binding domain of the LacI family, ccpA: catabolite control protein A. (334 aa)
	scrR	HTH-type transcriptional repressor, sucrose-responsive transcription factor. (342 aa)
	purR	HTH-type transcriptional repressor purR; Is the main repressor of the genes involved in the de novo synthesis of purine nucleotides, regulating purB, purC, purEK, purF, purHD, purL, purMN and guaBA expression. PurR is allosterically activated to bind its cognate DNA by binding the purine corepressors, hypoxanthine or guanine, thereby effecting transcription repression. (341 aa)
	araF	D-galactose-binding periplasmic protein precursor (GBP) (D-galactose/ D-glucose-binding protein) (GGBP), Periplasmic binding protein/LacI transcriptional regulator, TC 3.A.1.2.2 L-arabinose-binding periplasmic protein precursor (ABP). (327 aa)
	mglB	Galactoside ABC transport system, periplasmic component precursor mglB; D-galactose-binding periplasmic protein precursor (GBP), TC 3.A.1.2.3 D-galactose-binding periplasmic protein. (331 aa)
	mglD	HTH-type transcriptional repressor MglD(galactoside repressor). (372 aa)
	fruR	HTH-type transcriptional repressor fruR; D-fructose-responsive transcription factor. (336 aa)
	rbsR3	HTH-type transcriptional repressor purR (Purine nucleotide synthesis repressor) (Pur regulon repressor), Periplasmic binding protein/LacI transcriptional regulator, Periplasmic binding proteins and sugar binding domain of the LacI family, ccpA: catabolite control protein A. (338 aa)
	yraM	Uncharacterized protein yraM; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). Belongs to the LpoA family. (674 aa)
	gntR3	Transcriptional regulator, Gluconate utilization operon repressor. (331 aa)
	livJ	Branched-chain amino acid ABC transport system, periplasmic component; Leucine-specific-binding protein precursor (LS-BP) (L-BP), TC 3.A.1.4.1 Leu/Ile/Val-binding protein. (371 aa)
	EAMY_3647	Putative ABC transport system, periplasmic component; Periplasmic binding protein/LacI transcriptional regulator, TC 3.A.1.2.-The Carbohydrate Uptake Transporter-2 (CUT2) Family. (352 aa)
	ptxS	HTH-type transcriptional repressor purR (Purine nucleotide synthesis repressor) (Pur regulon repressor), Periplasmic binding protein/LacI transcriptional regulator. (347 aa)

Your Current Organism:

Erwinia amylovora

NCBI taxonomy Id: 665029
Other names: E. amylovora CFBP1430, Erwinia amylovora CFBP1430, Erwinia amylovora str. CFBP1430, Erwinia amylovora strain CFBP1430

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mglB	mglD	EAMY_2288	EAMY_2289	Galactoside ABC transport system, periplasmic component precursor mglB; D-galactose-binding periplasmic protein precursor (GBP), TC 3.A.1.2.3 D-galactose-binding periplasmic protein.	HTH-type transcriptional repressor MglD(galactoside repressor).	0.515
mglD	mglB	EAMY_2289	EAMY_2288	HTH-type transcriptional repressor MglD(galactoside repressor).	Galactoside ABC transport system, periplasmic component precursor mglB; D-galactose-binding periplasmic protein precursor (GBP), TC 3.A.1.2.3 D-galactose-binding periplasmic protein.	0.515
rbsB	rbsR1	EAMY_0021	EAMY_0023	D-ribose-binding periplasmic protein precursor, Periplasmic binding protein/LacI transcriptional regulator, TC 3.A.1.2.1 D-ribose-binding periplasmic protein precursor.	Ribose operon repressor, Periplasmic binding protein/LacI transcriptional regulator, Periplasmic binding proteins and sugar binding domain of the LacI family, ccpA: catabolite control protein A.	0.919
rbsR1	rbsB	EAMY_0023	EAMY_0021	Ribose operon repressor, Periplasmic binding protein/LacI transcriptional regulator, Periplasmic binding proteins and sugar binding domain of the LacI family, ccpA: catabolite control protein A.	D-ribose-binding periplasmic protein precursor, Periplasmic binding protein/LacI transcriptional regulator, TC 3.A.1.2.1 D-ribose-binding periplasmic protein precursor.	0.919