(17 nodes) Basal transcription factors network (Sclerotinia sclerotiorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SS1G_00913	Uncharacterized protein. (71 aa)
	SS1G_01136	TFIIB-type domain-containing protein. (350 aa)
	SS1G_01416	Uncharacterized protein. (363 aa)
	SS1G_04211	Uncharacterized protein. (715 aa)
	SS1G_04596	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (420 aa)
	SS1G_04717	RING-type domain-containing protein. (362 aa)
	SS1G_05728	Uncharacterized protein. (475 aa)
	SS1G_05935	Uncharacterized protein. (643 aa)
	SS1G_06051	Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. (400 aa)
	SS1G_07292	CYCLIN domain-containing protein; Belongs to the cyclin family. (383 aa)
	SS1G_07615	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (479 aa)
	SS1G_07704	Uncharacterized protein. (847 aa)
	SS1G_08504	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (97 aa)
	SS1G_08915	HTH TFE/IIEalpha-type domain-containing protein. (449 aa)
	SS1G_09606	Helicase ATP-binding domain-containing protein. (616 aa)
	SS1G_11654	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (297 aa)
	SS1G_13425	Uncharacterized protein. (356 aa)

Your Current Organism:

Sclerotinia sclerotiorum

NCBI taxonomy Id: 665079
Other names: S. sclerotiorum 1980 UF-70, Sclerotinia sclerotiorum 1980 UF-70

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SS1G_00913	SS1G_01136	A7E6I8	A7E760	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.809
SS1G_00913	SS1G_01416	A7E6I8	A7E7Y8	Uncharacterized protein.	Uncharacterized protein.	0.811
SS1G_00913	SS1G_04211	A7E6I8	A7EFX0	Uncharacterized protein.	Uncharacterized protein.	0.811
SS1G_00913	SS1G_04596	A7E6I8	A7EH04	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
SS1G_00913	SS1G_04717	A7E6I8	A7EHC5	Uncharacterized protein.	RING-type domain-containing protein.	0.968
SS1G_00913	SS1G_05728	A7E6I8	A7EK82	Uncharacterized protein.	Uncharacterized protein.	0.811
SS1G_00913	SS1G_05935	A7E6I8	A7EKT8	Uncharacterized protein.	Uncharacterized protein.	0.995
SS1G_00913	SS1G_06051	A7E6I8	A7EL54	Uncharacterized protein.	Serine/threonine-protein kinase; Belongs to the protein kinase superfamily.	0.869
SS1G_00913	SS1G_07292	A7E6I8	A7EPP3	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.869
SS1G_00913	SS1G_07615	A7E6I8	A7EQL3	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.996
SS1G_00913	SS1G_07704	A7E6I8	A7EQV1	Uncharacterized protein.	Uncharacterized protein.	0.997
SS1G_00913	SS1G_08504	A7E6I8	A7ET49	Uncharacterized protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.783
SS1G_00913	SS1G_08915	A7E6I8	A7EUA8	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.985
SS1G_00913	SS1G_09606	A7E6I8	A7EW97	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.993
SS1G_00913	SS1G_11654	A7E6I8	A7F233	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.985
SS1G_00913	SS1G_13425	A7E6I8	A7F745	Uncharacterized protein.	Uncharacterized protein.	0.998
SS1G_01136	SS1G_00913	A7E760	A7E6I8	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.809
SS1G_01136	SS1G_01416	A7E760	A7E7Y8	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.996
SS1G_01136	SS1G_04211	A7E760	A7EFX0	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.963
SS1G_01136	SS1G_04596	A7E760	A7EH04	TFIIB-type domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.984