STRINGSTRING
SS1G_05642 SS1G_05642 SS1G_14093 SS1G_14093 SS1G_13928 SS1G_13928 SS1G_13927 SS1G_13927 SS1G_13425 SS1G_13425 SS1G_12014 SS1G_12014 SS1G_11915 SS1G_11915 SS1G_11879 SS1G_11879 SS1G_11832 SS1G_11832 SS1G_12270 SS1G_12270 SS1G_12247 SS1G_12247 SS1G_12042 SS1G_12042 SS1G_11654 SS1G_11654 SS1G_11338 SS1G_11338 SS1G_11264 SS1G_11264 SS1G_10790 SS1G_10790 SS1G_10776 SS1G_10776 SS1G_10772 SS1G_10772 SS1G_10770 SS1G_10770 SS1G_10429 SS1G_10429 SS1G_09864 SS1G_09864 SS1G_09863 SS1G_09863 SS1G_09612 SS1G_09612 SS1G_09606 SS1G_09606 SS1G_09569 SS1G_09569 SS1G_08937 SS1G_08937 SS1G_08915 SS1G_08915 SS1G_08504 SS1G_08504 SS1G_08475 SS1G_08475 SS1G_08079 SS1G_08079 SS1G_07770 SS1G_07770 SS1G_07727 SS1G_07727 SS1G_07704 SS1G_07704 SS1G_07672 SS1G_07672 SS1G_07615 SS1G_07615 SS1G_07564 SS1G_07564 INO80 INO80 SS1G_07389 SS1G_07389 SS1G_07307 SS1G_07307 SS1G_07293 SS1G_07293 SS1G_07292 SS1G_07292 SS1G_07016 SS1G_07016 SS1G_06726 SS1G_06726 SS1G_06713 SS1G_06713 SS1G_06696 SS1G_06696 SS1G_06692 SS1G_06692 SS1G_06648 SS1G_06648 SS1G_06609 SS1G_06609 SS1G_06196 SS1G_06196 SS1G_06128 SS1G_06128 SS1G_06114 SS1G_06114 SS1G_06051 SS1G_06051 SS1G_05935 SS1G_05935 SS1G_05928 SS1G_05928 SS1G_05855 SS1G_05855 SS1G_05783 SS1G_05783 SS1G_05728 SS1G_05728 SS1G_05650 SS1G_05650 SS1G_05593 SS1G_05593 SS1G_05346 SS1G_05346 sub2 sub2 SS1G_04966 SS1G_04966 SS1G_04211 SS1G_04211 SS1G_04057 SS1G_04057 SS1G_04056 SS1G_04056 SS1G_03978 SS1G_03978 SS1G_03660 SS1G_03660 SS1G_03048 SS1G_03048 SS1G_03009 SS1G_03009 SS1G_02937 SS1G_02937 SS1G_02723 SS1G_02723 SS1G_01700 SS1G_01700 SS1G_01626 SS1G_01626 SS1G_01592 SS1G_01592 SS1G_01416 SS1G_01416 SS1G_01182 SS1G_01182 SS1G_01136 SS1G_01136 SS1G_01123 SS1G_01123 SS1G_00913 SS1G_00913 SS1G_00901 SS1G_00901 SS1G_00885 SS1G_00885 SS1G_00664 SS1G_00664 SS1G_00452 SS1G_00452 SS1G_00292 SS1G_00292 SS1G_00234 SS1G_00234 SS1G_00199 SS1G_00199 SS1G_00191 SS1G_00191 dbp2 dbp2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SS1G_05642Uncharacterized protein. (695 aa)
SS1G_14093Uncharacterized protein. (1098 aa)
SS1G_13928BTP domain-containing protein. (130 aa)
SS1G_13927TAFII55_N domain-containing protein. (533 aa)
SS1G_13425Uncharacterized protein. (356 aa)
SS1G_12014Uncharacterized protein. (835 aa)
SS1G_11915Acyl_transf_3 domain-containing protein. (448 aa)
SS1G_11879RRM domain-containing protein. (788 aa)
SS1G_11832Uncharacterized protein. (444 aa)
SS1G_12270Uncharacterized protein. (264 aa)
SS1G_12247Transcription elongation factor s-ii. (301 aa)
SS1G_12042RNase_PH domain-containing protein. (261 aa)
SS1G_11654Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (297 aa)
SS1G_11338CBFD_NFYB_HMF domain-containing protein. (618 aa)
SS1G_11264TFIID_20kDa domain-containing protein. (705 aa)
SS1G_10790Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1408 aa)
SS1G_10776Uncharacterized protein. (1086 aa)
SS1G_10772Uncharacterized protein. (141 aa)
SS1G_10770Uncharacterized protein. (281 aa)
SS1G_10429Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (686 aa)
SS1G_09864Uncharacterized protein. (400 aa)
SS1G_09863Uncharacterized protein. (375 aa)
SS1G_09612TAF domain-containing protein. (469 aa)
SS1G_09606Helicase ATP-binding domain-containing protein. (616 aa)
SS1G_09569Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (192 aa)
SS1G_08937RPOL9 domain-containing protein. (119 aa)
SS1G_08915HTH TFE/IIEalpha-type domain-containing protein. (449 aa)
SS1G_08504Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (97 aa)
SS1G_08475DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (151 aa)
SS1G_08079RPOL4c domain-containing protein. (146 aa)
SS1G_07770Uncharacterized protein. (167 aa)
SS1G_07727CDC73_C domain-containing protein. (421 aa)
SS1G_07704Uncharacterized protein. (847 aa)
SS1G_07672Protein kinase domain-containing protein. (1071 aa)
SS1G_07615General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (479 aa)
SS1G_07564Uncharacterized protein. (332 aa)
INO80Chromatin-remodeling ATPase INO80; ATPase component of the INO80 complex which remodels chromatin by shifting nucleosomes and is involved in DNA repair. (1707 aa)
SS1G_07389Uncharacterized protein. (817 aa)
SS1G_07307Uncharacterized protein. (165 aa)
SS1G_07293Uncharacterized protein. (828 aa)
SS1G_07292CYCLIN domain-containing protein; Belongs to the cyclin family. (383 aa)
SS1G_07016Uncharacterized protein. (1016 aa)
SS1G_06726Uncharacterized protein. (99 aa)
SS1G_06713Uncharacterized protein. (182 aa)
SS1G_06696TATA-box binding protein. (251 aa)
SS1G_06692Uncharacterized protein. (435 aa)
SS1G_06648Uncharacterized protein. (581 aa)
SS1G_06609Fungal_trans domain-containing protein. (1609 aa)
SS1G_06196E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (588 aa)
SS1G_06128DUF3591 domain-containing protein. (1089 aa)
SS1G_06114RNA_pol_L_2 domain-containing protein. (124 aa)
SS1G_06051Serine/threonine-protein kinase; Belongs to the protein kinase superfamily. (400 aa)
SS1G_05935Uncharacterized protein. (643 aa)
SS1G_05928DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1746 aa)
SS1G_05855Uncharacterized protein. (200 aa)
SS1G_05783HMG box domain-containing protein. (267 aa)
SS1G_05728Uncharacterized protein. (475 aa)
SS1G_05650Uncharacterized protein. (1524 aa)
SS1G_05593Uncharacterized protein. (2021 aa)
SS1G_05346RPOLD domain-containing protein. (335 aa)
sub2ATP-dependent RNA helicase sub2; ATP-binding RNA helicase involved in transcription elongation and required for the export of mRNA out of the nucleus. SUB2 plays also a role in pre-mRNA splicing and spliceosome assembly. May be involved in rDNA and telomeric silencing, and maintenance of genome integrity (By similarity); Belongs to the DEAD box helicase family. DECD subfamily. (444 aa)
SS1G_04966Plus3 domain-containing protein. (627 aa)
SS1G_04211Uncharacterized protein. (715 aa)
SS1G_04057Uncharacterized protein. (326 aa)
SS1G_04056Fungal_trans domain-containing protein. (337 aa)
SS1G_03978Rtt106 domain-containing protein. (419 aa)
SS1G_03660Uncharacterized protein. (356 aa)
SS1G_03048Uncharacterized protein. (479 aa)
SS1G_03009Uncharacterized protein. (242 aa)
SS1G_02937Uncharacterized protein. (226 aa)
SS1G_02723Uncharacterized protein. (2425 aa)
SS1G_01700Uncharacterized protein. (334 aa)
SS1G_01626Uncharacterized protein. (694 aa)
SS1G_01592Uncharacterized protein. (618 aa)
SS1G_01416Uncharacterized protein. (363 aa)
SS1G_01182PHD domain-containing protein. (811 aa)
SS1G_01136TFIIB-type domain-containing protein. (350 aa)
SS1G_01123Uncharacterized protein. (519 aa)
SS1G_00913Uncharacterized protein. (71 aa)
SS1G_00901Uncharacterized protein. (334 aa)
SS1G_00885DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1267 aa)
SS1G_00664Uncharacterized protein. (658 aa)
SS1G_00452Uncharacterized protein. (820 aa)
SS1G_00292DUF4211 domain-containing protein. (755 aa)
SS1G_00234Uncharacterized protein. (488 aa)
SS1G_00199Protein kinase domain-containing protein. (581 aa)
SS1G_00191Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (139 aa)
dbp2ATP-dependent RNA helicase dbp2; ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. (572 aa)
Your Current Organism:
Sclerotinia sclerotiorum
NCBI taxonomy Id: 665079
Other names: S. sclerotiorum 1980 UF-70, Sclerotinia sclerotiorum 1980 UF-70
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