(9 nodes) Clathrin adaptor complex network (Sclerotinia sclerotiorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SS1G_06066	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (911 aa)
	SS1G_07372	AP-1 complex subunit gamma. (860 aa)
	SS1G_07523	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (414 aa)
	SS1G_08464	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (726 aa)
	SS1G_10252	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (118 aa)
	SS1G_11848	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (727 aa)
	SS1G_01944	PDZ_1 domain-containing protein. (924 aa)
	SS1G_01970	Clat_adaptor_s domain-containing protein. (57 aa)
	SS1G_03675	Ubiquitin-like domain-containing protein. (234 aa)

Your Current Organism:

Sclerotinia sclerotiorum

NCBI taxonomy Id: 665079
Other names: S. sclerotiorum 1980 UF-70, Sclerotinia sclerotiorum 1980 UF-70

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SS1G_01970	SS1G_03675	A7E9J0	A7EED5	Clat_adaptor_s domain-containing protein.	Ubiquitin-like domain-containing protein.	0.915
SS1G_01970	SS1G_06066	A7E9J0	A7EL69	Clat_adaptor_s domain-containing protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.990
SS1G_01970	SS1G_07372	A7E9J0	A7EPX3	Clat_adaptor_s domain-containing protein.	AP-1 complex subunit gamma.	0.955
SS1G_01970	SS1G_07523	A7E9J0	A7EQC2	Clat_adaptor_s domain-containing protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.999
SS1G_01970	SS1G_08464	A7E9J0	A7ET09	Clat_adaptor_s domain-containing protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.915
SS1G_01970	SS1G_11848	A7E9J0	A7F3K2	Clat_adaptor_s domain-containing protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.915
SS1G_03675	SS1G_01970	A7EED5	A7E9J0	Ubiquitin-like domain-containing protein.	Clat_adaptor_s domain-containing protein.	0.915
SS1G_03675	SS1G_06066	A7EED5	A7EL69	Ubiquitin-like domain-containing protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.796
SS1G_03675	SS1G_07372	A7EED5	A7EPX3	Ubiquitin-like domain-containing protein.	AP-1 complex subunit gamma.	0.926
SS1G_03675	SS1G_07523	A7EED5	A7EQC2	Ubiquitin-like domain-containing protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.922
SS1G_03675	SS1G_10252	A7EED5	A7EY37	Ubiquitin-like domain-containing protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.909
SS1G_06066	SS1G_01970	A7EL69	A7E9J0	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Clat_adaptor_s domain-containing protein.	0.990
SS1G_06066	SS1G_03675	A7EL69	A7EED5	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Ubiquitin-like domain-containing protein.	0.796
SS1G_06066	SS1G_07372	A7EL69	A7EPX3	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP-1 complex subunit gamma.	0.595
SS1G_06066	SS1G_07523	A7EL69	A7EQC2	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.999
SS1G_06066	SS1G_08464	A7EL69	A7ET09	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.978
SS1G_06066	SS1G_11848	A7EL69	A7F3K2	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.796
SS1G_07372	SS1G_01970	A7EPX3	A7E9J0	AP-1 complex subunit gamma.	Clat_adaptor_s domain-containing protein.	0.955
SS1G_07372	SS1G_03675	A7EPX3	A7EED5	AP-1 complex subunit gamma.	Ubiquitin-like domain-containing protein.	0.926
SS1G_07372	SS1G_06066	A7EPX3	A7EL69	AP-1 complex subunit gamma.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.595